Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609086

Identifier: 86609086

GI number: 86609086

Start: 1695937

End: 1697277

Strand: Reverse

Name: 86609086

Synonym: CYB_1624

Alternate gene names: NA

Gene position: 1697277-1695937 (Counterclockwise)

Preceding gene: 86609087

Following gene: 86609084

Centisome position: 55.71

GC content: 59.06

Gene sequence:

>1341_bases
GTGGCTACACAAACATTGGTGATGGATGCAGTGGAGCAGTTGGGCCTGCGGGTCACGCTGGGAGATATTGCATCCAGCAC
GGGCTTGGCTCTACACGAGGCCAAACAAGAGCTGCTGAATTTGGCCCAAAAGGCGGAGGGGCATCTCCAGGTTTCCCGGC
AGGGGGAGATTACCTATGTTTTCCCGCCGGATTTTCGCAGCATTCTCAAGCGCAAGGAGCAGCAGGATCGGCTAGCAGCC
CTGCGTCGCCGGTTGTGGGGGGGCTTCCTCTATGGGTTGCGCATCTCCTTTGGCATTCTGCTGGTGGTGTCGATTGTCTT
GATCGTCCTGGCGTTGATTGCCTTGCAGATGGCCAGTAGCCGCGAGCAGGACAATCGCAGCCGATCGCGGGGGATAGGGT
TTTACTACTTCCCCAATCTTTGGATCGGCAACCCCTTCTGGGATCCCTATCCCTACTATGGCAGCTACTCCGGTCGGACG
CGCCCCCGCCAGCCGCAAAAATCCGAGCTGAACTTCCTGGAAGCGGTGTACAGCTTCCTCTTTGGGGACGGGGATCCCAA
TGCCAACCTGGAGGAGGAGCGCTATGCCCTCATTGGCCAACTGATTCGTGCCAATGGGGGGGTGATCGCAGCGGAACAGG
TGTTGCCCTACCTGGATGTGGAGCCAGGATCCCCGGCCTTGGAATACGAAGATTACATGCTGCCCATTTTGCTCAAGTTC
GACGGCCAGCCGGAGGTCAGCGAGGATGGGGACATTGTCTACCGCTTCCCAGAGCTGCAGGTGGCCGCCTCAGAGCGCAA
GCCCAAGGGGATCCCTGAGGTGTTGCAGGAGAAACCTTGGGTGTTCAGCCGGGCCACGCCTGGTCAACTGACCCTGGCAG
GAGGCTTGGGAGTTCTCAATTTCTTTCTGGCCGCCATTCTCTATGGGGCACGGGAGGAGGTGGCAGCGGCAGCCGGCAGC
AATGCTTTTTTAGCCTTCATCTACCCGTTGATTGGGTTTCTGTTTCTCTACGGCAGCCTCTTTTTGGCGGTGCCCGCCGT
TCGCTGGCTAGCCTTGCAAATCCGCAACCAGGGAGTGGAGCGTCGCAATCGTGTCCGGCAGCTTTGGCGAGAGCATCTGC
AGCATCCCACAGAGGCGCTGCTGCGCAAACTCAACTTTGCCCGCCGCTTCCGCCGTCAGGGAGTTGTGCCAGAGTCAGAC
ACCATTTACTCAACCGATCGGGATTTGATCGAGCAGCGGGACTACCGTCTGGACGAGCCGGCATTCCGCCAACTTTTGGA
ATCCAAAGCTCAGCAGGATCGCCCCGAAACCGAACAAGTGCGCAAGCCGCGTCCCCTCTAG

Upstream 100 bases:

>100_bases
TGGGAGTAGAGGAAACGATAGGTCTAGCTCAGGGGAGCGGATCTGCGTCCAGGGATCCCAAAGGCTCCTCGACAATGGGG
GCGGAAAGCGGAGGTTAAGA

Downstream 100 bases:

>100_bases
AGAGGTCATGGCCGTTGGGCAAACTCCCGGTCTGCCGTTTGAGCTGAGACCCATTCGAGTTTCTTGCCCAGCCGGAGAAT
CCGGCGCTTGGGTTTGCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MATQTLVMDAVEQLGLRVTLGDIASSTGLALHEAKQELLNLAQKAEGHLQVSRQGEITYVFPPDFRSILKRKEQQDRLAA
LRRRLWGGFLYGLRISFGILLVVSIVLIVLALIALQMASSREQDNRSRSRGIGFYYFPNLWIGNPFWDPYPYYGSYSGRT
RPRQPQKSELNFLEAVYSFLFGDGDPNANLEEERYALIGQLIRANGGVIAAEQVLPYLDVEPGSPALEYEDYMLPILLKF
DGQPEVSEDGDIVYRFPELQVAASERKPKGIPEVLQEKPWVFSRATPGQLTLAGGLGVLNFFLAAILYGAREEVAAAAGS
NAFLAFIYPLIGFLFLYGSLFLAVPAVRWLALQIRNQGVERRNRVRQLWREHLQHPTEALLRKLNFARRFRRQGVVPESD
TIYSTDRDLIEQRDYRLDEPAFRQLLESKAQQDRPETEQVRKPRPL

Sequences:

>Translated_446_residues
MATQTLVMDAVEQLGLRVTLGDIASSTGLALHEAKQELLNLAQKAEGHLQVSRQGEITYVFPPDFRSILKRKEQQDRLAA
LRRRLWGGFLYGLRISFGILLVVSIVLIVLALIALQMASSREQDNRSRSRGIGFYYFPNLWIGNPFWDPYPYYGSYSGRT
RPRQPQKSELNFLEAVYSFLFGDGDPNANLEEERYALIGQLIRANGGVIAAEQVLPYLDVEPGSPALEYEDYMLPILLKF
DGQPEVSEDGDIVYRFPELQVAASERKPKGIPEVLQEKPWVFSRATPGQLTLAGGLGVLNFFLAAILYGAREEVAAAAGS
NAFLAFIYPLIGFLFLYGSLFLAVPAVRWLALQIRNQGVERRNRVRQLWREHLQHPTEALLRKLNFARRFRRQGVVPESD
TIYSTDRDLIEQRDYRLDEPAFRQLLESKAQQDRPETEQVRKPRPL
>Mature_445_residues
ATQTLVMDAVEQLGLRVTLGDIASSTGLALHEAKQELLNLAQKAEGHLQVSRQGEITYVFPPDFRSILKRKEQQDRLAAL
RRRLWGGFLYGLRISFGILLVVSIVLIVLALIALQMASSREQDNRSRSRGIGFYYFPNLWIGNPFWDPYPYYGSYSGRTR
PRQPQKSELNFLEAVYSFLFGDGDPNANLEEERYALIGQLIRANGGVIAAEQVLPYLDVEPGSPALEYEDYMLPILLKFD
GQPEVSEDGDIVYRFPELQVAASERKPKGIPEVLQEKPWVFSRATPGQLTLAGGLGVLNFFLAAILYGAREEVAAAAGSN
AFLAFIYPLIGFLFLYGSLFLAVPAVRWLALQIRNQGVERRNRVRQLWREHLQHPTEALLRKLNFARRFRRQGVVPESDT
IYSTDRDLIEQRDYRLDEPAFRQLLESKAQQDRPETEQVRKPRPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50717; Mature: 50586

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATQTLVMDAVEQLGLRVTLGDIASSTGLALHEAKQELLNLAQKAEGHLQVSRQGEITYV
CCCHHHHHHHHHHCCCEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEE
FPPDFRSILKRKEQQDRLAALRRRLWGGFLYGLRISFGILLVVSIVLIVLALIALQMASS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
REQDNRSRSRGIGFYYFPNLWIGNPFWDPYPYYGSYSGRTRPRQPQKSELNFLEAVYSFL
CCHHHHHHHCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
FGDGDPNANLEEERYALIGQLIRANGGVIAAEQVLPYLDVEPGSPALEYEDYMLPILLKF
HCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHCCCCEECCCCCCCCCCCCCEEEEEEEE
DGQPEVSEDGDIVYRFPELQVAASERKPKGIPEVLQEKPWVFSRATPGQLTLAGGLGVLN
CCCCCCCCCCCEEEECCCCEEECCCCCCCCCHHHHHCCCCEEECCCCCCEEEECHHHHHH
FFLAAILYGAREEVAAAAGSNAFLAFIYPLIGFLFLYGSLFLAVPAVRWLALQIRNQGVE
HHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
RRNRVRQLWREHLQHPTEALLRKLNFARRFRRQGVVPESDTIYSTDRDLIEQRDYRLDEP
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHCCCCCCH
AFRQLLESKAQQDRPETEQVRKPRPL
HHHHHHHHHHHCCCCCHHHHCCCCCC
>Mature Secondary Structure 
ATQTLVMDAVEQLGLRVTLGDIASSTGLALHEAKQELLNLAQKAEGHLQVSRQGEITYV
CCHHHHHHHHHHCCCEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEE
FPPDFRSILKRKEQQDRLAALRRRLWGGFLYGLRISFGILLVVSIVLIVLALIALQMASS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
REQDNRSRSRGIGFYYFPNLWIGNPFWDPYPYYGSYSGRTRPRQPQKSELNFLEAVYSFL
CCHHHHHHHCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
FGDGDPNANLEEERYALIGQLIRANGGVIAAEQVLPYLDVEPGSPALEYEDYMLPILLKF
HCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHCCCCEECCCCCCCCCCCCCEEEEEEEE
DGQPEVSEDGDIVYRFPELQVAASERKPKGIPEVLQEKPWVFSRATPGQLTLAGGLGVLN
CCCCCCCCCCCEEEECCCCEEECCCCCCCCCHHHHHCCCCEEECCCCCCEEEECHHHHHH
FFLAAILYGAREEVAAAAGSNAFLAFIYPLIGFLFLYGSLFLAVPAVRWLALQIRNQGVE
HHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
RRNRVRQLWREHLQHPTEALLRKLNFARRFRRQGVVPESDTIYSTDRDLIEQRDYRLDEP
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHCCCCCCH
AFRQLLESKAQQDRPETEQVRKPRPL
HHHHHHHHHHHCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA