The gene/protein map for NC_007776 is currently unavailable.
Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is popC [H]

Identifier: 86608890

GI number: 86608890

Start: 1490936

End: 1491823

Strand: Direct

Name: popC [H]

Synonym: CYB_1422

Alternate gene names: 86608890

Gene position: 1490936-1491823 (Clockwise)

Preceding gene: 86608888

Following gene: 86608895

Centisome position: 48.94

GC content: 62.05

Gene sequence:

>888_bases
ATGGCTCGGCACGAGAGGTGGGCGGTGGGCCTGTTGGCGATCTGGGTTTGGCTGAGCTGGGGGATGGGGGCCTGGTCTGC
TCCCCTTTGTCGGGATCCCCTCTTGCTGCGGCAGATCTTGGCAGCTCTGGGCCGTCCGGAGGTGAAGGTAGAGGAGGTGG
CCCTTTTTGATCCGGATCAGTGTCTTGTCCAACTGGTGTTGGATCGCCAGGGGTTGAGCGGCTCCTTGCCGCCCGAAATA
GGCCAATTTCGCCGGTTGCGAGCCTTGTCCCTCAGCCACAACCAACTTTCCGGCCCCCTGCCGCCCGAGCTGGGGCAACT
CGGCCAGTTGGAAAACCTGTTTCTCGACTACAACGAATTCTCCGGCTCCATTCCATCCGAGCTGGGGCAGCTGCGCAACC
TGCGCGGCCTGTTTTTGGATCACAACCAGCTCTCTGGGCCTATTCCCCCCCAGCTGGGGCAACTGCGCCACCTGGAAAAC
CTCATCCTGCAAAACAACCGCCTCAGCGGCACCCTTCCCGGCCAACTGGGCCAGATGAGCTCCCTCAAGGGCCTGTTTTT
GGATCGCAATCAGCTCTCTGGGCCTATCCCCCCTCAACTGGGGCAACTGCACCATCTGGAAAACCTCTACTTGTCGGACA
ATCGCCTCAGCGGATCCCTGCCCCCCGAGCTGGCTCAGCTGAATCAGTTACGGGATCTGCGCCTGGCACGTAACCAATTC
ACGGGAGAACTGCCGACCTTTTTGGCAGAACTGCCCCGACTGGAGCGGCTGCACATCGAGGGAAACCCCGGCCTCTGCTT
GCCGGCCGCCCTGTCGGAGTGGTTTGCCGGCCTAAACCCGGCGGATCCCCTGCCATCTCCCCTCTGCTCATGGACTCCGT
CCCGCTAA

Upstream 100 bases:

>100_bases
TTCCCCTGCCCATAGCAACAACCCCGGCGGAGGCGGGACGGAGTAGGATGCTACCTTGGCAAAGATCCTTTGGAGAGCAG
GGATGAAGCAGCAGAGGGGA

Downstream 100 bases:

>100_bases
CGCGACCGGTAGCCTACTGGGACTCCGTCCCGCTCAAGTGCTCCGCACCGCGACCGCGAACGGCGCAAGTGTGGGATCCC
AGCTTTTCCGGGGTGGAGGG

Product: leucine-rich repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MARHERWAVGLLAIWVWLSWGMGAWSAPLCRDPLLLRQILAALGRPEVKVEEVALFDPDQCLVQLVLDRQGLSGSLPPEI
GQFRRLRALSLSHNQLSGPLPPELGQLGQLENLFLDYNEFSGSIPSELGQLRNLRGLFLDHNQLSGPIPPQLGQLRHLEN
LILQNNRLSGTLPGQLGQMSSLKGLFLDRNQLSGPIPPQLGQLHHLENLYLSDNRLSGSLPPELAQLNQLRDLRLARNQF
TGELPTFLAELPRLERLHIEGNPGLCLPAALSEWFAGLNPADPLPSPLCSWTPSR

Sequences:

>Translated_295_residues
MARHERWAVGLLAIWVWLSWGMGAWSAPLCRDPLLLRQILAALGRPEVKVEEVALFDPDQCLVQLVLDRQGLSGSLPPEI
GQFRRLRALSLSHNQLSGPLPPELGQLGQLENLFLDYNEFSGSIPSELGQLRNLRGLFLDHNQLSGPIPPQLGQLRHLEN
LILQNNRLSGTLPGQLGQMSSLKGLFLDRNQLSGPIPPQLGQLHHLENLYLSDNRLSGSLPPELAQLNQLRDLRLARNQF
TGELPTFLAELPRLERLHIEGNPGLCLPAALSEWFAGLNPADPLPSPLCSWTPSR
>Mature_294_residues
ARHERWAVGLLAIWVWLSWGMGAWSAPLCRDPLLLRQILAALGRPEVKVEEVALFDPDQCLVQLVLDRQGLSGSLPPEIG
QFRRLRALSLSHNQLSGPLPPELGQLGQLENLFLDYNEFSGSIPSELGQLRNLRGLFLDHNQLSGPIPPQLGQLRHLENL
ILQNNRLSGTLPGQLGQMSSLKGLFLDRNQLSGPIPPQLGQLHHLENLYLSDNRLSGSLPPELAQLNQLRDLRLARNQFT
GELPTFLAELPRLERLHIEGNPGLCLPAALSEWFAGLNPADPLPSPLCSWTPSR

Specific function: Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway [H]

COG id: COG4886

COG function: function code S; Leucine-rich repeat (LRR) protein

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 22 LRR (leucine-rich) repeats [H]

Homologues:

Organism=Homo sapiens, GI110825984, Length=211, Percent_Identity=37.4407582938389, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI95113664, Length=197, Percent_Identity=36.0406091370558, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI45827731, Length=179, Percent_Identity=41.8994413407821, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI45827729, Length=179, Percent_Identity=41.8994413407821, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI238908508, Length=252, Percent_Identity=29.3650793650794, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI41281398, Length=176, Percent_Identity=36.9318181818182, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI21361633, Length=204, Percent_Identity=33.8235294117647, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI55770895, Length=140, Percent_Identity=37.1428571428571, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI8923909, Length=140, Percent_Identity=37.1428571428571, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI16904383, Length=214, Percent_Identity=34.5794392523364, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4503743, Length=258, Percent_Identity=30.6201550387597, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI63003903, Length=222, Percent_Identity=32.8828828828829, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI194394161, Length=150, Percent_Identity=39.3333333333333, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI187829877, Length=144, Percent_Identity=37.5, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI62241040, Length=144, Percent_Identity=37.5, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI187829871, Length=144, Percent_Identity=37.5, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI40217803, Length=149, Percent_Identity=38.9261744966443, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI6912638, Length=169, Percent_Identity=36.094674556213, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI167466264, Length=170, Percent_Identity=31.7647058823529, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI153792305, Length=228, Percent_Identity=35.0877192982456, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI34577083, Length=149, Percent_Identity=37.5838926174497, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI61742784, Length=150, Percent_Identity=42, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI61742786, Length=150, Percent_Identity=42, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI122937315, Length=277, Percent_Identity=29.6028880866426, Blast_Score=65, Evalue=9e-11,
Organism=Homo sapiens, GI157743290, Length=203, Percent_Identity=33.4975369458128, Blast_Score=65, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI71981160, Length=201, Percent_Identity=31.8407960199005, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71981152, Length=201, Percent_Identity=31.8407960199005, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71993778, Length=184, Percent_Identity=34.2391304347826, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71991525, Length=206, Percent_Identity=29.126213592233, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71991531, Length=206, Percent_Identity=29.126213592233, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI25143890, Length=205, Percent_Identity=31.7073170731707, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71993783, Length=184, Percent_Identity=34.2391304347826, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71984630, Length=179, Percent_Identity=31.8435754189944, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI62472958, Length=165, Percent_Identity=38.1818181818182, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24650336, Length=165, Percent_Identity=38.1818181818182, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24650330, Length=165, Percent_Identity=38.1818181818182, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281362653, Length=165, Percent_Identity=38.1818181818182, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221379725, Length=183, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221379722, Length=183, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281362651, Length=165, Percent_Identity=38.1818181818182, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281362657, Length=165, Percent_Identity=38.1818181818182, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24650334, Length=165, Percent_Identity=38.1818181818182, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24650332, Length=165, Percent_Identity=38.1818181818182, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI281362655, Length=165, Percent_Identity=38.1818181818182, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007092, Length=165, Percent_Identity=38.1818181818182, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21358045, Length=248, Percent_Identity=31.0483870967742, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45551891, Length=248, Percent_Identity=31.0483870967742, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI161078264, Length=248, Percent_Identity=31.0483870967742, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19922294, Length=217, Percent_Identity=29.4930875576037, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI161078262, Length=248, Percent_Identity=31.0483870967742, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI161078260, Length=248, Percent_Identity=31.0483870967742, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17933612, Length=167, Percent_Identity=37.125748502994, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001611 [H]

Pfam domain/function: PF00560 LRR_1 [H]

EC number: NA

Molecular weight: Translated: 32751; Mature: 32620

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MARHERWAVGLLAIWVWLSWGMGAWSAPLCRDPLLLRQILAALGRPEVKVEEVALFDPDQ
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEHHEEEECHHH
CLVQLVLDRQGLSGSLPPEIGQFRRLRALSLSHNQLSGPLPPELGQLGQLENLFLDYNEF
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHCCHHHHHCCHHHH
SGSIPSELGQLRNLRGLFLDHNQLSGPIPPQLGQLRHLENLILQNNRLSGTLPGQLGQMS
CCCCHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH
SLKGLFLDRNQLSGPIPPQLGQLHHLENLYLSDNRLSGSLPPELAQLNQLRDLRLARNQF
HHHHHEEEHHHCCCCCCHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC
TGELPTFLAELPRLERLHIEGNPGLCLPAALSEWFAGLNPADPLPSPLCSWTPSR
CCHHHHHHHHCCCCEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARHERWAVGLLAIWVWLSWGMGAWSAPLCRDPLLLRQILAALGRPEVKVEEVALFDPDQ
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEHHEEEECHHH
CLVQLVLDRQGLSGSLPPEIGQFRRLRALSLSHNQLSGPLPPELGQLGQLENLFLDYNEF
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHCCHHHHHCCHHHH
SGSIPSELGQLRNLRGLFLDHNQLSGPIPPQLGQLRHLENLILQNNRLSGTLPGQLGQMS
CCCCHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH
SLKGLFLDRNQLSGPIPPQLGQLHHLENLYLSDNRLSGSLPPELAQLNQLRDLRLARNQF
HHHHHEEEHHHCCCCCCHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC
TGELPTFLAELPRLERLHIEGNPGLCLPAALSEWFAGLNPADPLPSPLCSWTPSR
CCHHHHHHHHCCCCEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10792715; 11823852 [H]