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The map label for this gene is yodJ [H]

Identifier: 86608537

GI number: 86608537

Start: 1096453

End: 1097280

Strand: Direct

Name: yodJ [H]

Synonym: CYB_1058

Alternate gene names: 86608537

Gene position: 1096453-1097280 (Clockwise)

Preceding gene: 86608536

Following gene: 86608538

Centisome position: 35.99

GC content: 60.39

Gene sequence:

>828_bases
ATGAACGACGACATTCCGGTCGCCCGTCGCCAGTCCACTCCGGCGAAAAAAGCGCAAAGTTCGGTGCCTGCCCTGAGGTC
CCGTCTAGTCTTGGGCCTGGTGCTGGTTGGGCTAGTGCTCCTGGCGGGTTGGGGGATAGAGAAGTTACCGGGATCCCAGC
AGGCGGCGGATCCCCAAGTTCTGGAAGAAACCGGTCAGCCCTCTCTGCCGCAGCCAACTGTGCAGAATGGGCGACCTTCT
CTGTTGGGGCACTATGCCTATTCCGAAGCCCCTGCAGACAGCTTGCGGGTGGTGGGCCACTACCGCGGTCGCGAGGTGCG
CCTACGCCAGGGGGCTGCTGAAAGTTACCTACGCATGAGCGAAGCAGCTCGAGCTGCCGGGATCCGCCTTGTCCCCATTT
CCGGGTTTCGCTCCATGGCGGAGCAGGAATTCTTGTTTTTTCAATTGGCTCAATCCCGAGCCTTGCGACCCGAGGAACGA
GCTGCTGTCAGTGCTCCCCCTGGCTACAGCGAGCACCACACTGGCTATGCCATCGACCTTGGGGATGCCGGGTTTCCGCA
GTGGGATACTCAAGAAGCCTTTGAGACCACCCCGGCCTTCCAGTGGCTGCAGAGCAACGCGGCCCGCTTTGGCTTTGAGC
TGTCTTTCCCCAGAAACAACCCTCAGGGGGTGAATTACGAACCCTGGCACTGGCGCTTTGTGGGCGACCGTGACAGCCTG
GAGACCTTCTACGCTCCCCAAATCAAACCATTCCCAAATCAGCCCAATCAAACCGAGACCCCTACTCTCCCGTCTTCCAG
AGGGAGAAGAGCTGGGAGTGAGGGCTGA

Upstream 100 bases:

>100_bases
CATCAATACCGAAACCCATGCCCGCGATATTTTGGCGGATTTGGGTTTGTAGAAACGCTGCCTCTTTTCAGTACTCCTCG
CTAGATCCCGGCCTTTGCGC

Downstream 100 bases:

>100_bases
CTCCTTTGGGGAGAGAGGAAAGGGGGAGCTCCTTGGGACTACCGTCACGGCCCTCTCCCTTGCAGGGATCTCATTCCCCT
CTTGAATGGGTTCACAAGCC

Product: D-alanyl-D-alanine carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MNDDIPVARRQSTPAKKAQSSVPALRSRLVLGLVLVGLVLLAGWGIEKLPGSQQAADPQVLEETGQPSLPQPTVQNGRPS
LLGHYAYSEAPADSLRVVGHYRGREVRLRQGAAESYLRMSEAARAAGIRLVPISGFRSMAEQEFLFFQLAQSRALRPEER
AAVSAPPGYSEHHTGYAIDLGDAGFPQWDTQEAFETTPAFQWLQSNAARFGFELSFPRNNPQGVNYEPWHWRFVGDRDSL
ETFYAPQIKPFPNQPNQTETPTLPSSRGRRAGSEG

Sequences:

>Translated_275_residues
MNDDIPVARRQSTPAKKAQSSVPALRSRLVLGLVLVGLVLLAGWGIEKLPGSQQAADPQVLEETGQPSLPQPTVQNGRPS
LLGHYAYSEAPADSLRVVGHYRGREVRLRQGAAESYLRMSEAARAAGIRLVPISGFRSMAEQEFLFFQLAQSRALRPEER
AAVSAPPGYSEHHTGYAIDLGDAGFPQWDTQEAFETTPAFQWLQSNAARFGFELSFPRNNPQGVNYEPWHWRFVGDRDSL
ETFYAPQIKPFPNQPNQTETPTLPSSRGRRAGSEG
>Mature_275_residues
MNDDIPVARRQSTPAKKAQSSVPALRSRLVLGLVLVGLVLLAGWGIEKLPGSQQAADPQVLEETGQPSLPQPTVQNGRPS
LLGHYAYSEAPADSLRVVGHYRGREVRLRQGAAESYLRMSEAARAAGIRLVPISGFRSMAEQEFLFFQLAQSRALRPEER
AAVSAPPGYSEHHTGYAIDLGDAGFPQWDTQEAFETTPAFQWLQSNAARFGFELSFPRNNPQGVNYEPWHWRFVGDRDSL
ETFYAPQIKPFPNQPNQTETPTLPSSRGRRAGSEG

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 30368; Mature: 30368

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDDIPVARRQSTPAKKAQSSVPALRSRLVLGLVLVGLVLLAGWGIEKLPGSQQAADPQV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHH
LEETGQPSLPQPTVQNGRPSLLGHYAYSEAPADSLRVVGHYRGREVRLRQGAAESYLRMS
HHHCCCCCCCCCCCCCCCCCCEEHHHHCCCCHHHHEEHECCCCCEEEEHHHHHHHHHHHH
EAARAAGIRLVPISGFRSMAEQEFLFFQLAQSRALRPEERAAVSAPPGYSEHHTGYAIDL
HHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCEEEEC
GDAGFPQWDTQEAFETTPAFQWLQSNAARFGFELSFPRNNPQGVNYEPWHWRFVGDRDSL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEECCCCCC
ETFYAPQIKPFPNQPNQTETPTLPSSRGRRAGSEG
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNDDIPVARRQSTPAKKAQSSVPALRSRLVLGLVLVGLVLLAGWGIEKLPGSQQAADPQV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHH
LEETGQPSLPQPTVQNGRPSLLGHYAYSEAPADSLRVVGHYRGREVRLRQGAAESYLRMS
HHHCCCCCCCCCCCCCCCCCCEEHHHHCCCCHHHHEEHECCCCCEEEEHHHHHHHHHHHH
EAARAAGIRLVPISGFRSMAEQEFLFFQLAQSRALRPEERAAVSAPPGYSEHHTGYAIDL
HHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCEEEEC
GDAGFPQWDTQEAFETTPAFQWLQSNAARFGFELSFPRNNPQGVNYEPWHWRFVGDRDSL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEECCCCCC
ETFYAPQIKPFPNQPNQTETPTLPSSRGRRAGSEG
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]