| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is cpcT3 [H]
Identifier: 86608507
GI number: 86608507
Start: 1071393
End: 1072049
Strand: Direct
Name: cpcT3 [H]
Synonym: CYB_1028
Alternate gene names: 86608507
Gene position: 1071393-1072049 (Clockwise)
Preceding gene: 86608505
Following gene: 86608508
Centisome position: 35.17
GC content: 54.79
Gene sequence:
>657_bases ATGTCTGTTTCCCCACAACTGGCTCAACTGGCCACCTGGATGGCAGGGCACTTCAACAACCTACAACAGGCGATTGCAGA GCCCGTCTGGTTTGCCAACATTCATGTGTACCAATGCCCCTTGCCTTGGTCGGTGTTGCAGGGGGTGGGGTTTTACGTGG AGCAACTGTACGACATTTATCCTGAGCAGCCTTACCGACAGCGGGTGATCCACCTCTTCGATACTCCAGATGGGATCCGG ATTCAAAACTATGCTCTGACAGCTCCTGACTCCTACAGGTGCGCCGGTCGGGAGTTGTTGCTAAGCAACGCTTACGCGAA GGGGAAATTGGCCGGTCTGACAGCAGCGGAGTTGGAACTCTTGCCCGGCTGTGTCACCCAGGTGGAATGGACGGGATCCT GCTATCGGGGCCGCAGCCTGCCCGGCAAAGGCTGTATTGTTGAACGCAAAGGCAGAACCACCTATTTGTACAGCGAGTTT GAGATCGGAGCCGACTACTTTCACAGCTTGGATCAAGGTCGGGATCCGGAGACCGATCAAGTGATCTGGGGATCCCTATC CGGGCCTTTTCGGTTTGTCAAAAAACAGGATTTTTCCCAGTACCTACCGCAGTGGGCTGAAGTGCTGAACCATGAGGCTG TTGGAGCAACTGGTTGA
Upstream 100 bases:
>100_bases CCATCGGGACGGAGTCCCTGACAGTTGGACAAAGTCTGCAGGATCAGGAGCGCTCGATCTGAATCTTCTCGATTTCAATC CATTGAATCCATCTGAACCT
Downstream 100 bases:
>100_bases GCAGCTGCGGGCGCTGGGGATCCCGTTCGCGTCGTCAGGACGGACTTCCCGGCGAGAGTTGGTCTGGCTAACCCTGCGGT TGGCCTGGGAAAACGCGATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 218; Mature: 217
Protein sequence:
>218_residues MSVSPQLAQLATWMAGHFNNLQQAIAEPVWFANIHVYQCPLPWSVLQGVGFYVEQLYDIYPEQPYRQRVIHLFDTPDGIR IQNYALTAPDSYRCAGRELLLSNAYAKGKLAGLTAAELELLPGCVTQVEWTGSCYRGRSLPGKGCIVERKGRTTYLYSEF EIGADYFHSLDQGRDPETDQVIWGSLSGPFRFVKKQDFSQYLPQWAEVLNHEAVGATG
Sequences:
>Translated_218_residues MSVSPQLAQLATWMAGHFNNLQQAIAEPVWFANIHVYQCPLPWSVLQGVGFYVEQLYDIYPEQPYRQRVIHLFDTPDGIR IQNYALTAPDSYRCAGRELLLSNAYAKGKLAGLTAAELELLPGCVTQVEWTGSCYRGRSLPGKGCIVERKGRTTYLYSEF EIGADYFHSLDQGRDPETDQVIWGSLSGPFRFVKKQDFSQYLPQWAEVLNHEAVGATG >Mature_217_residues SVSPQLAQLATWMAGHFNNLQQAIAEPVWFANIHVYQCPLPWSVLQGVGFYVEQLYDIYPEQPYRQRVIHLFDTPDGIRI QNYALTAPDSYRCAGRELLLSNAYAKGKLAGLTAAELELLPGCVTQVEWTGSCYRGRSLPGKGCIVERKGRTTYLYSEFE IGADYFHSLDQGRDPETDQVIWGSLSGPFRFVKKQDFSQYLPQWAEVLNHEAVGATG
Specific function: Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CpcT/CpeT biliprotein lyase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010404 [H]
Pfam domain/function: PF06206 DUF1001 [H]
EC number: NA
Molecular weight: Translated: 24559; Mature: 24428
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSPQLAQLATWMAGHFNNLQQAIAEPVWFANIHVYQCPLPWSVLQGVGFYVEQLYDIY CCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHC PEQPYRQRVIHLFDTPDGIRIQNYALTAPDSYRCAGRELLLSNAYAKGKLAGLTAAELEL CCCCHHHHEEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHH LPGCVTQVEWTGSCYRGRSLPGKGCIVERKGRTTYLYSEFEIGADYFHSLDQGRDPETDQ CCCHHHEEEECCCCCCCCCCCCCCCEEECCCCEEEEEEEHHCCHHHHHHHHCCCCCCCCC VIWGSLSGPFRFVKKQDFSQYLPQWAEVLNHEAVGATG EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SVSPQLAQLATWMAGHFNNLQQAIAEPVWFANIHVYQCPLPWSVLQGVGFYVEQLYDIY CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHC PEQPYRQRVIHLFDTPDGIRIQNYALTAPDSYRCAGRELLLSNAYAKGKLAGLTAAELEL CCCCHHHHEEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHH LPGCVTQVEWTGSCYRGRSLPGKGCIVERKGRTTYLYSEFEIGADYFHSLDQGRDPETDQ CCCHHHEEEECCCCCCCCCCCCCCCEEECCCCEEEEEEEHHCCHHHHHHHHCCCCCCCCC VIWGSLSGPFRFVKKQDFSQYLPQWAEVLNHEAVGATG EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA