Click here to switch to the map view.

The map label for this gene is yfkH [H]

Identifier: 86608508

GI number: 86608508

Start: 1072024

End: 1072998

Strand: Direct

Name: yfkH [H]

Synonym: CYB_1029

Alternate gene names: 86608508

Gene position: 1072024-1072998 (Clockwise)

Preceding gene: 86608507

Following gene: 86608509

Centisome position: 35.19

GC content: 59.08

Gene sequence:

>975_bases
ATGAGGCTGTTGGAGCAACTGGTTGAGCAGCTGCGGGCGCTGGGGATCCCGTTCGCGTCGTCAGGACGGACTTCCCGGCG
AGAGTTGGTCTGGCTAACCCTGCGGTTGGCCTGGGAAAACGCGATGCGCTACCGGCTGTTTGGCCTGGCCTCTGAAATGG
CCTATAGCTCGATGTTGGCGCTGTTCCCCTTCATCCTCACGCTCCTGACCGGGGTTGGGCTGTTTGTCGGCTCCTCTGAG
CAAGCCTTCGAGCGCTTGATGGAGCAGTTGAGCCAAATTGCTCCCCAAGAGGCCCTGACGCTTTTGGATCGGTATGTGCG
CGAGCTCCGCTTCGGGCAGAATCGGGGGTTGTTGTCGCTCGGCTTCTTGGGCACCCTGTGGGCTGCTTCTGGAGCCATGG
GGGCGGTGATGACAGCTTTGGATCTCAGCCATGAGATCCCTCAAGATAGGCGCCGTCCCTTCTGGAGACGCAAGCTGATC
TCGCTGGTTTGGATGCTCGCCACCTTGGGGTTGACCGGACTGGCCAGCTTGATCTTTTTGTTCAGTGCCAGCTTTTTGCG
CTTCTTGTACAGGAAAGCGGGATTCTTAGCGCAGGAAGTTGGCGGGCCGACTCAGTTGGATCCCCTGCGAGAGCTGGGGT
TGAACTTGTGGGGGATCCTCACTTGGCCAATTTCCTTGGGGTTGGTCGTCTTCTCCTGCTGGGTGCTGTATCGATTTGGC
CCCAGCTTGCGCCGACCCCAAATCCCGATTTGGCCGGGGGCCATCGTGGCCAGCCTACTGTGGGTTGGGGTGTCGTGGGG
GTTGCGGATTTACGTGGAGCACTTTGGGCAGTTCAACCAAGTCTACGGGGCGGTGGGGGCGGTTATTGTTCTGCTGCTCT
GGGTTTGGCTCACTTCCTTGGCGCTGCTGTTTGGGGATCAAATCAACATCGCCCTCTACCAGGCGCAAAAATGGATTGAA
GAACGGGATCCCTAG

Upstream 100 bases:

>100_bases
ACCGATCAAGTGATCTGGGGATCCCTATCCGGGCCTTTTCGGTTTGTCAAAAAACAGGATTTTTCCCAGTACCTACCGCA
GTGGGCTGAAGTGCTGAACC

Downstream 100 bases:

>100_bases
CCCTTACTCCAAATCCGAGTCATGGATGCAGACGGAAATTCTCTCACCCACTCCTGAGCACATTGCCGTAGCGGCGGCAG
CCTTGCTGCGGGGCCAGTTG

Product: YihY family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MRLLEQLVEQLRALGIPFASSGRTSRRELVWLTLRLAWENAMRYRLFGLASEMAYSSMLALFPFILTLLTGVGLFVGSSE
QAFERLMEQLSQIAPQEALTLLDRYVRELRFGQNRGLLSLGFLGTLWAASGAMGAVMTALDLSHEIPQDRRRPFWRRKLI
SLVWMLATLGLTGLASLIFLFSASFLRFLYRKAGFLAQEVGGPTQLDPLRELGLNLWGILTWPISLGLVVFSCWVLYRFG
PSLRRPQIPIWPGAIVASLLWVGVSWGLRIYVEHFGQFNQVYGAVGAVIVLLLWVWLTSLALLFGDQINIALYQAQKWIE
ERDP

Sequences:

>Translated_324_residues
MRLLEQLVEQLRALGIPFASSGRTSRRELVWLTLRLAWENAMRYRLFGLASEMAYSSMLALFPFILTLLTGVGLFVGSSE
QAFERLMEQLSQIAPQEALTLLDRYVRELRFGQNRGLLSLGFLGTLWAASGAMGAVMTALDLSHEIPQDRRRPFWRRKLI
SLVWMLATLGLTGLASLIFLFSASFLRFLYRKAGFLAQEVGGPTQLDPLRELGLNLWGILTWPISLGLVVFSCWVLYRFG
PSLRRPQIPIWPGAIVASLLWVGVSWGLRIYVEHFGQFNQVYGAVGAVIVLLLWVWLTSLALLFGDQINIALYQAQKWIE
ERDP
>Mature_324_residues
MRLLEQLVEQLRALGIPFASSGRTSRRELVWLTLRLAWENAMRYRLFGLASEMAYSSMLALFPFILTLLTGVGLFVGSSE
QAFERLMEQLSQIAPQEALTLLDRYVRELRFGQNRGLLSLGFLGTLWAASGAMGAVMTALDLSHEIPQDRRRPFWRRKLI
SLVWMLATLGLTGLASLIFLFSASFLRFLYRKAGFLAQEVGGPTQLDPLRELGLNLWGILTWPISLGLVVFSCWVLYRFG
PSLRRPQIPIWPGAIVASLLWVGVSWGLRIYVEHFGQFNQVYGAVGAVIVLLLWVWLTSLALLFGDQINIALYQAQKWIE
ERDP

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790319, Length=313, Percent_Identity=25.5591054313099, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 36694; Mature: 36694

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLEQLVEQLRALGIPFASSGRTSRRELVWLTLRLAWENAMRYRLFGLASEMAYSSMLA
CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFPFILTLLTGVGLFVGSSEQAFERLMEQLSQIAPQEALTLLDRYVRELRFGQNRGLLSL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHH
GFLGTLWAASGAMGAVMTALDLSHEIPQDRRRPFWRRKLISLVWMLATLGLTGLASLIFL
HHHHHHHHHCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSASFLRFLYRKAGFLAQEVGGPTQLDPLRELGLNLWGILTWPISLGLVVFSCWVLYRFG
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
PSLRRPQIPIWPGAIVASLLWVGVSWGLRIYVEHFGQFNQVYGAVGAVIVLLLWVWLTSL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLFGDQINIALYQAQKWIEERDP
HHHHCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLLEQLVEQLRALGIPFASSGRTSRRELVWLTLRLAWENAMRYRLFGLASEMAYSSMLA
CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFPFILTLLTGVGLFVGSSEQAFERLMEQLSQIAPQEALTLLDRYVRELRFGQNRGLLSL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHH
GFLGTLWAASGAMGAVMTALDLSHEIPQDRRRPFWRRKLISLVWMLATLGLTGLASLIFL
HHHHHHHHHCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSASFLRFLYRKAGFLAQEVGGPTQLDPLRELGLNLWGILTWPISLGLVVFSCWVLYRFG
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
PSLRRPQIPIWPGAIVASLLWVGVSWGLRIYVEHFGQFNQVYGAVGAVIVLLLWVWLTSL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLFGDQINIALYQAQKWIEERDP
HHHHCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]