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The map label for this gene is arnC [H]

Identifier: 86608476

GI number: 86608476

Start: 1035046

End: 1036269

Strand: Reverse

Name: arnC [H]

Synonym: CYB_0997

Alternate gene names: 86608476

Gene position: 1036269-1035046 (Counterclockwise)

Preceding gene: 86608477

Following gene: 86608474

Centisome position: 34.01

GC content: 55.31

Gene sequence:

>1224_bases
ATGCTTCATGAAGCTCCTACTTCCTCTGCCGATCCCAAAGCTTCTGCAGCTCCTTTTCAGATTCCACCTCTGTCTCAGTC
CAGCCCTGTCCAACTGTCGCTGGTCATTCCCACCTACAACGAAGCCTCCAGTATCTGCAGCCTGATCCGGCAGTTGTGTG
CCCACCTAGACACGATTCTGCCTGGAAGCTATGAGTTGATTGTGGTGGATGACAATAGCCCCGATTACACTGCCAAAGTG
GCCCAAGGATTGCAAAAAGAATTCCCTCAACTGCAAGTCATTTGTCGCCACCACGAACGAGGCCTGGCCACTGCCGTGCT
GCGGGGATGGCAAGCTGCCCGCGGCGAGGTGTTGGGGGTTATGGATGGGGATTTGCAGCATCCGCCGGAGATTGTCCTCA
AATTGTGGCCGCTCATCCAGAAAGGGGCAGATTTGGTGGTGGGCAGCCGCTATGCACCATCGGGAGGGGTGAGCCACTGG
AGCCTGGGCCGGCGCATTGTCTCCCGCGGGGCCCAATGGATTGGGCTGGTTCTGCTGCCGGGAGTTTTCAGCCGTGTTTC
CGATCCGTTGAGCGGACTGTTCCTGGTCAGACGCCAAGCCATTGCCGGGATCCCGCTCAACCCCAAGGGTTACAAGCTGC
TGATCGAGGTGCTGGCGCGGGGCCGGGTGAAAACCATTGCTGAAGTCGGCTACATCTTTCAGGAGCGCCAAAACGGGGAG
AGCAAAATCCAACTGCAAACTTGTCTCCAATATCTCCACCACCTGATGGTGCTGCGCTTTTCGCTAGGGCAGGTGGGATC
CTTTTTGCGCTTCAGCACAGTTGGCCTATCCGGCACCTTGGTGGACATGGCTTTGCTCTATGTTTTGCACGATCCCACCA
ACTTGGGATGGGATCTCATAACCAGTAAGCTGGTTGCTTCGGAGGTGGCCATTCTCAATAACTTCCTCTGGAACGACCTG
TGGACTTTTCGCCATGTGACCCGCTTGCAGCCGGGGCCCTGGAATCGCCTGAAGCGGTTGGCGAAGTTTAACGTTATCTG
CTTAATTGGCTTGGTTCTCAACACTTCACTGGTGACCTTGCTGAGCGAGCGCTTGGGCATTCATTATTTGTTGGCCAACT
TAATTGCCATCGGTATTGTTGTATTCTGGAACTTCTACCTCAACTCCAAGCTGAGCTGGAGGAGTGCAGAGGTTAAGTCG
GACTCTGTGGGTGGCCAGTCTTGA

Upstream 100 bases:

>100_bases
AGGGGATCGTTCTGTGGACCCAGTATGAACCAAGGCAGTCCTAGGATTTGCAGCCCTAGGCGGAGGATTTTTGTTTTATT
GTTTTTGGATGGCCTGCTGA

Downstream 100 bases:

>100_bases
GTATGGCTTTTTCCAGGAAGAGCCAATAGGAAAGTACGGGCATTTCGCTCATTTCCTCACGGTCTGGGCCCCCTTTGGCA
TCCACCTTCGCCCCTTGTTC

Product: glycosyl transferase, group 2

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MLHEAPTSSADPKASAAPFQIPPLSQSSPVQLSLVIPTYNEASSICSLIRQLCAHLDTILPGSYELIVVDDNSPDYTAKV
AQGLQKEFPQLQVICRHHERGLATAVLRGWQAARGEVLGVMDGDLQHPPEIVLKLWPLIQKGADLVVGSRYAPSGGVSHW
SLGRRIVSRGAQWIGLVLLPGVFSRVSDPLSGLFLVRRQAIAGIPLNPKGYKLLIEVLARGRVKTIAEVGYIFQERQNGE
SKIQLQTCLQYLHHLMVLRFSLGQVGSFLRFSTVGLSGTLVDMALLYVLHDPTNLGWDLITSKLVASEVAILNNFLWNDL
WTFRHVTRLQPGPWNRLKRLAKFNVICLIGLVLNTSLVTLLSERLGIHYLLANLIAIGIVVFWNFYLNSKLSWRSAEVKS
DSVGGQS

Sequences:

>Translated_407_residues
MLHEAPTSSADPKASAAPFQIPPLSQSSPVQLSLVIPTYNEASSICSLIRQLCAHLDTILPGSYELIVVDDNSPDYTAKV
AQGLQKEFPQLQVICRHHERGLATAVLRGWQAARGEVLGVMDGDLQHPPEIVLKLWPLIQKGADLVVGSRYAPSGGVSHW
SLGRRIVSRGAQWIGLVLLPGVFSRVSDPLSGLFLVRRQAIAGIPLNPKGYKLLIEVLARGRVKTIAEVGYIFQERQNGE
SKIQLQTCLQYLHHLMVLRFSLGQVGSFLRFSTVGLSGTLVDMALLYVLHDPTNLGWDLITSKLVASEVAILNNFLWNDL
WTFRHVTRLQPGPWNRLKRLAKFNVICLIGLVLNTSLVTLLSERLGIHYLLANLIAIGIVVFWNFYLNSKLSWRSAEVKS
DSVGGQS
>Mature_407_residues
MLHEAPTSSADPKASAAPFQIPPLSQSSPVQLSLVIPTYNEASSICSLIRQLCAHLDTILPGSYELIVVDDNSPDYTAKV
AQGLQKEFPQLQVICRHHERGLATAVLRGWQAARGEVLGVMDGDLQHPPEIVLKLWPLIQKGADLVVGSRYAPSGGVSHW
SLGRRIVSRGAQWIGLVLLPGVFSRVSDPLSGLFLVRRQAIAGIPLNPKGYKLLIEVLARGRVKTIAEVGYIFQERQNGE
SKIQLQTCLQYLHHLMVLRFSLGQVGSFLRFSTVGLSGTLVDMALLYVLHDPTNLGWDLITSKLVASEVAILNNFLWNDL
WTFRHVTRLQPGPWNRLKRLAKFNVICLIGLVLNTSLVTLLSERLGIHYLLANLIAIGIVVFWNFYLNSKLSWRSAEVKS
DSVGGQS

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=246, Percent_Identity=34.1463414634146, Blast_Score=116, Evalue=3e-26,
Organism=Escherichia coli, GI1788588, Length=239, Percent_Identity=24.2677824267782, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71999402, Length=240, Percent_Identity=35, Blast_Score=120, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6325441, Length=254, Percent_Identity=33.8582677165354, Blast_Score=139, Evalue=6e-34,
Organism=Drosophila melanogaster, GI24585265, Length=237, Percent_Identity=34.5991561181435, Blast_Score=119, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 44944; Mature: 44944

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHEAPTSSADPKASAAPFQIPPLSQSSPVQLSLVIPTYNEASSICSLIRQLCAHLDTIL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
PGSYELIVVDDNSPDYTAKVAQGLQKEFPQLQVICRHHERGLATAVLRGWQAARGEVLGV
CCCEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
MDGDLQHPPEIVLKLWPLIQKGADLVVGSRYAPSGGVSHWSLGRRIVSRGAQWIGLVLLP
ECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
GVFSRVSDPLSGLFLVRRQAIAGIPLNPKGYKLLIEVLARGRVKTIAEVGYIFQERQNGE
HHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
SKIQLQTCLQYLHHLMVLRFSLGQVGSFLRFSTVGLSGTLVDMALLYVLHDPTNLGWDLI
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHH
TSKLVASEVAILNNFLWNDLWTFRHVTRLQPGPWNRLKRLAKFNVICLIGLVLNTSLVTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSERLGIHYLLANLIAIGIVVFWNFYLNSKLSWRSAEVKSDSVGGQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLHEAPTSSADPKASAAPFQIPPLSQSSPVQLSLVIPTYNEASSICSLIRQLCAHLDTIL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
PGSYELIVVDDNSPDYTAKVAQGLQKEFPQLQVICRHHERGLATAVLRGWQAARGEVLGV
CCCEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
MDGDLQHPPEIVLKLWPLIQKGADLVVGSRYAPSGGVSHWSLGRRIVSRGAQWIGLVLLP
ECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
GVFSRVSDPLSGLFLVRRQAIAGIPLNPKGYKLLIEVLARGRVKTIAEVGYIFQERQNGE
HHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
SKIQLQTCLQYLHHLMVLRFSLGQVGSFLRFSTVGLSGTLVDMALLYVLHDPTNLGWDLI
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHH
TSKLVASEVAILNNFLWNDLWTFRHVTRLQPGPWNRLKRLAKFNVICLIGLVLNTSLVTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSERLGIHYLLANLIAIGIVVFWNFYLNSKLSWRSAEVKSDSVGGQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA