Click here to switch to the map view.

The map label for this gene is 86608394

Identifier: 86608394

GI number: 86608394

Start: 951715

End: 952518

Strand: Direct

Name: 86608394

Synonym: CYB_0914

Alternate gene names: NA

Gene position: 951715-952518 (Clockwise)

Preceding gene: 86608392

Following gene: 86608395

Centisome position: 31.24

GC content: 57.21

Gene sequence:

>804_bases
ATGCGAGCAGAAGGTTGGGAGAGGCGAGTTGGTCGCTGGTTGCCCAAGGCCACCCTTGCCGGAGCCGTATTGATCCTGGT
GGCAATGGGCAGGCCGCTGCGATTGGTGGGCAACGGAGAAAATATGGTGGTGTTCACCTGGGGAGGGGGGGTGAGCCCGA
TGGCTTTGCAGCCTGGTCTCCATTGGGTGCCGCCTTTTGTCTCGCGCACGGTTACCTTCGATGTAAAAACGCAGGCCCTC
ACCTGGAAGGACAAAGACCCGACTGCCTACGCGCCGCGGCTGGTGGCCCTTTCTCAGGATGGGCAGCAGATTGCGGCTGA
GGCGACGCTGCAGTTTCGCATTGTGGACGCCCCCAAGGTCTATACGCAACTGGGGGAAAATTACCTGGATCGCATCGCCC
CCATCGTCCGGTCGGTCATTCTGAATGAGACCAGCGGCTTTTCTGCCCAGGCTCTGTATTCCACGGAGCGCCCGCTGCTG
CAAGGACAAATTCGGGAACGGGTGGCTCTTCTGCTGAAGGAATACGGCATCGAGGTTTTGGATTTTCTGCTGCGGGATGT
GGATTTCGATCCTGATTTCGTAGCGGCCATTGAGGCAAAAACCATTGCCGAAAATCAACTGGCGCAAAAGCAATTTGAGA
TCGAGCAGGCCCGCCAAGATGCCCGCACCATCATTTCTCAAGCGGAGGCAGAAGCCGGTCAATTGAGAGCCAAAGCACAG
GCCCTCACCCAAAATCCGCAGTACCTAGAGGTGGTGAAAGCCACAGTACTGGGATCCCGCCTGGAAACTTTGATCACCAA
ATAA

Upstream 100 bases:

>100_bases
TCTCGCGGGATCCCTGGAGAAAACTTAAAAGATAGCGGCGATTTCTCAGCCTCATTTCCCCACAGCCGCGAGAATGGCTG
CATGCGCAGGAGATGGGGAG

Downstream 100 bases:

>100_bases
CTCAACAGGAAATCAATCCTTTTAGCCTGTCCCCAATTTCCTCAGCTCTTCTCACCGACCCTAAAACGGGAGCAGCCGCC
ATGTATCCAACAGGAGAAAC

Product: stomatin/podocin/band 7/nephrosis.2/SPFH (stomatin) family protein

Products: NA

Alternate protein names: Tomatin/Podocin/Band 7/Nephrosis.2/SPFH Family Protein; Spfh Domain Band 7 Family Protein; Membrane Protease; SPFH Domain / Band 7 Family / Prohibitin Protein; HflC/HflK Family Protein; Prohibitin

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MRAEGWERRVGRWLPKATLAGAVLILVAMGRPLRLVGNGENMVVFTWGGGVSPMALQPGLHWVPPFVSRTVTFDVKTQAL
TWKDKDPTAYAPRLVALSQDGQQIAAEATLQFRIVDAPKVYTQLGENYLDRIAPIVRSVILNETSGFSAQALYSTERPLL
QGQIRERVALLLKEYGIEVLDFLLRDVDFDPDFVAAIEAKTIAENQLAQKQFEIEQARQDARTIISQAEAEAGQLRAKAQ
ALTQNPQYLEVVKATVLGSRLETLITK

Sequences:

>Translated_267_residues
MRAEGWERRVGRWLPKATLAGAVLILVAMGRPLRLVGNGENMVVFTWGGGVSPMALQPGLHWVPPFVSRTVTFDVKTQAL
TWKDKDPTAYAPRLVALSQDGQQIAAEATLQFRIVDAPKVYTQLGENYLDRIAPIVRSVILNETSGFSAQALYSTERPLL
QGQIRERVALLLKEYGIEVLDFLLRDVDFDPDFVAAIEAKTIAENQLAQKQFEIEQARQDARTIISQAEAEAGQLRAKAQ
ALTQNPQYLEVVKATVLGSRLETLITK
>Mature_267_residues
MRAEGWERRVGRWLPKATLAGAVLILVAMGRPLRLVGNGENMVVFTWGGGVSPMALQPGLHWVPPFVSRTVTFDVKTQAL
TWKDKDPTAYAPRLVALSQDGQQIAAEATLQFRIVDAPKVYTQLGENYLDRIAPIVRSVILNETSGFSAQALYSTERPLL
QGQIRERVALLLKEYGIEVLDFLLRDVDFDPDFVAAIEAKTIAENQLAQKQFEIEQARQDARTIISQAEAEAGQLRAKAQ
ALTQNPQYLEVVKATVLGSRLETLITK

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI6005854, Length=226, Percent_Identity=28.3185840707965, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI221307584, Length=226, Percent_Identity=28.3185840707965, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI4505773, Length=238, Percent_Identity=26.0504201680672, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI193205005, Length=230, Percent_Identity=26.9565217391304, Blast_Score=74, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6321571, Length=215, Percent_Identity=26.5116279069767, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321670, Length=222, Percent_Identity=26.1261261261261, Blast_Score=78, Evalue=2e-15,
Organism=Drosophila melanogaster, GI161077242, Length=227, Percent_Identity=27.3127753303965, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI161077244, Length=227, Percent_Identity=27.3127753303965, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI161077238, Length=227, Percent_Identity=27.3127753303965, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI161077236, Length=227, Percent_Identity=27.3127753303965, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI161077234, Length=227, Percent_Identity=27.3127753303965, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI161077240, Length=227, Percent_Identity=27.3127753303965, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24585145, Length=240, Percent_Identity=27.0833333333333, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24585147, Length=240, Percent_Identity=27.0833333333333, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI281365192, Length=246, Percent_Identity=24.7967479674797, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29627; Mature: 29627

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAEGWERRVGRWLPKATLAGAVLILVAMGRPLRLVGNGENMVVFTWGGGVSPMALQPGL
CCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCCCCEECCCC
HWVPPFVSRTVTFDVKTQALTWKDKDPTAYAPRLVALSQDGQQIAAEATLQFRIVDAPKV
CCCCHHHHCEEEEEEEEEEEEECCCCCCCCCCEEEEECCCCHHHHHEEEEEEEEECCHHH
YTQLGENYLDRIAPIVRSVILNETSGFSAQALYSTERPLLQGQIRERVALLLKEYGIEVL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHH
DFLLRDVDFDPDFVAAIEAKTIAENQLAQKQFEIEQARQDARTIISQAEAEAGQLRAKAQ
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTQNPQYLEVVKATVLGSRLETLITK
HHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRAEGWERRVGRWLPKATLAGAVLILVAMGRPLRLVGNGENMVVFTWGGGVSPMALQPGL
CCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCCCCEECCCC
HWVPPFVSRTVTFDVKTQALTWKDKDPTAYAPRLVALSQDGQQIAAEATLQFRIVDAPKV
CCCCHHHHCEEEEEEEEEEEEECCCCCCCCCCEEEEECCCCHHHHHEEEEEEEEECCHHH
YTQLGENYLDRIAPIVRSVILNETSGFSAQALYSTERPLLQGQIRERVALLLKEYGIEVL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHH
DFLLRDVDFDPDFVAAIEAKTIAENQLAQKQFEIEQARQDARTIISQAEAEAGQLRAKAQ
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTQNPQYLEVVKATVLGSRLETLITK
HHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA