Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86608360
Identifier: 86608360
GI number: 86608360
Start: 907215
End: 908729
Strand: Direct
Name: 86608360
Synonym: CYB_0879
Alternate gene names: NA
Gene position: 907215-908729 (Clockwise)
Preceding gene: 86608359
Following gene: 86608361
Centisome position: 29.78
GC content: 58.35
Gene sequence:
>1515_bases TTGAACGCTGCTCAACGGATTCTCAGACGCTCTGTCCTCAGGGGGCGAAGTCGCTGGCTGCTCCTCTACGAGAAGGGGAT GGCCCTGCTGGCCCTGAGCAACCTGTGCTTGGTGCTCTTCGACATGAGCTATGTGCCTGGGCGAGATTTTTGGCTCCAGG GTCGGGTGCAAATTTTTGGCGCCTTTGGTCCTCCCATTCCGCTGCCGATTCTCTCCGAAGAAACCAGCCGTTCCCCGGTG ACCGACCTATACGATCCCATCAAAGGTATCGAGCCCAACCCCGAAACCCAGCGCTACTTGGCCTTGGTGGATGAGCTGCG CCAGGTTACCCTGCGGTTTGGCGTGGAGTCGGAAGCGGCAGCACCGATCCTGGCCCGCTTGCGGGAGCTCAGCGACGAGA TGATTGAGACCAATCCCTTTCAGGGCGCCAACAAAACTGGCCAGTTTGTGCGTATCCTCAATTTGATGCGGGAGCACATC CCAGAAGCCGACTCTGCCAGAGCCGCCTTTGCCCGCTTTTGGACTGCTGAGTACTTGGCCAGCGCCGATCCCGCAGATGG AATTGAATTTTTCCAGATCCGGCTGCGCCCCCTCTTTGAGACCAACTATTTCCGCCCCATTGGTGAGAGCGGTAACCCTG TTGACTTTTTCCCGGTGCTGGATTTTCCCTTCGTGCTTCTGTTTGGGCTGGAATTTTTGCTGCGCACGGTGGCCATCAGC CGCCGCTACACCGGCGTCAATTGGCTGGATGCCATGCTCTGGCGTTGGTACGATGTGCTGTTGCTGCTGCCCTTTTGGCG CTGGCTGCGGGTGATCCCCGTCACCATCCGGCTGGGACAAGCACAGTTGCTGGATCTGGAGCGGGTACGCGCCCAGGTGA GCCAGGGCTTTGTTACCAACTTCGCCGAGGATCTGACGGAAGTCATTGTCGTGCGGGTGATCAACCAAATCCAGGTATCC ATTCAGCGGGGATCCCTGCCCCTACTGCCGGCAGCGCGTACCCAGCGCGACTACATTGATATCAACAACACCAACGAGCT GGAGGCGATTGCCAACCTGGTTTTTCGCATTGTCCTCTACCGCGTTTTGCCCCAGGTGCAACCGGAATTGCAACAACTGC TCCGCTACAACCTGGATGGCCTGCTCAAGCAGTTGCCTGCCATGCAAACTCTAGAACAGCTTCCCGGCCTGGGATCCCTG CCTGGCCAACTGACGGAGCACCTGGCCAACGAGCTGACCACCACCACCTACAAAACCCTGACGGGCAGTTTCGAGGATCC CGTCGGCTCCAAGCTGGCAGCGCAACTGATGCAGCGGTTTGGTGAGGTCTTGGCACGAGAACTCACCCAGGAGCACGCTC TGGAGGAAATTCGCTCTCTCCTGCAAGACTTGCTGGAAGAGATCAAAATTAACTACGTCGAGCGGCTATCCCACGAGGAT CTGGAGGAGGTGATGGAGCAAACCCGCCAGCTTCGGCAAAAGGCCCAGCAACTGGAGAAAGACCGCCGCCGATAG
Upstream 100 bases:
>100_bases TGCACTACAGCTTGCTCAAGCCAAGGGTGGCTCACCCCAGGGGTGGTAGACTAAGGCTGACTCAAGCCAACTGGTTGACC CAAGGCCGGGACGGAGTCCT
Downstream 100 bases:
>100_bases AGTTCGGGGGATTGGTTGACGAGGTTTCGCCAGTTCAGTAGGATAATGATTCCAAGTCGGGCGAGTGGCGAAACTGGTAG ACGCACCGCACTCAAAATGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 504; Mature: 504
Protein sequence:
>504_residues MNAAQRILRRSVLRGRSRWLLLYEKGMALLALSNLCLVLFDMSYVPGRDFWLQGRVQIFGAFGPPIPLPILSEETSRSPV TDLYDPIKGIEPNPETQRYLALVDELRQVTLRFGVESEAAAPILARLRELSDEMIETNPFQGANKTGQFVRILNLMREHI PEADSARAAFARFWTAEYLASADPADGIEFFQIRLRPLFETNYFRPIGESGNPVDFFPVLDFPFVLLFGLEFLLRTVAIS RRYTGVNWLDAMLWRWYDVLLLLPFWRWLRVIPVTIRLGQAQLLDLERVRAQVSQGFVTNFAEDLTEVIVVRVINQIQVS IQRGSLPLLPAARTQRDYIDINNTNELEAIANLVFRIVLYRVLPQVQPELQQLLRYNLDGLLKQLPAMQTLEQLPGLGSL PGQLTEHLANELTTTTYKTLTGSFEDPVGSKLAAQLMQRFGEVLARELTQEHALEEIRSLLQDLLEEIKINYVERLSHED LEEVMEQTRQLRQKAQQLEKDRRR
Sequences:
>Translated_504_residues MNAAQRILRRSVLRGRSRWLLLYEKGMALLALSNLCLVLFDMSYVPGRDFWLQGRVQIFGAFGPPIPLPILSEETSRSPV TDLYDPIKGIEPNPETQRYLALVDELRQVTLRFGVESEAAAPILARLRELSDEMIETNPFQGANKTGQFVRILNLMREHI PEADSARAAFARFWTAEYLASADPADGIEFFQIRLRPLFETNYFRPIGESGNPVDFFPVLDFPFVLLFGLEFLLRTVAIS RRYTGVNWLDAMLWRWYDVLLLLPFWRWLRVIPVTIRLGQAQLLDLERVRAQVSQGFVTNFAEDLTEVIVVRVINQIQVS IQRGSLPLLPAARTQRDYIDINNTNELEAIANLVFRIVLYRVLPQVQPELQQLLRYNLDGLLKQLPAMQTLEQLPGLGSL PGQLTEHLANELTTTTYKTLTGSFEDPVGSKLAAQLMQRFGEVLARELTQEHALEEIRSLLQDLLEEIKINYVERLSHED LEEVMEQTRQLRQKAQQLEKDRRR >Mature_504_residues MNAAQRILRRSVLRGRSRWLLLYEKGMALLALSNLCLVLFDMSYVPGRDFWLQGRVQIFGAFGPPIPLPILSEETSRSPV TDLYDPIKGIEPNPETQRYLALVDELRQVTLRFGVESEAAAPILARLRELSDEMIETNPFQGANKTGQFVRILNLMREHI PEADSARAAFARFWTAEYLASADPADGIEFFQIRLRPLFETNYFRPIGESGNPVDFFPVLDFPFVLLFGLEFLLRTVAIS RRYTGVNWLDAMLWRWYDVLLLLPFWRWLRVIPVTIRLGQAQLLDLERVRAQVSQGFVTNFAEDLTEVIVVRVINQIQVS IQRGSLPLLPAARTQRDYIDINNTNELEAIANLVFRIVLYRVLPQVQPELQQLLRYNLDGLLKQLPAMQTLEQLPGLGSL PGQLTEHLANELTTTTYKTLTGSFEDPVGSKLAAQLMQRFGEVLARELTQEHALEEIRSLLQDLLEEIKINYVERLSHED LEEVMEQTRQLRQKAQQLEKDRRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58028; Mature: 58028
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAAQRILRRSVLRGRSRWLLLYEKGMALLALSNLCLVLFDMSYVPGRDFWLQGRVQIFG CCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEE AFGPPIPLPILSEETSRSPVTDLYDPIKGIEPNPETQRYLALVDELRQVTLRFGVESEAA CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH APILARLRELSDEMIETNPFQGANKTGQFVRILNLMREHIPEADSARAAFARFWTAEYLA HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH SADPADGIEFFQIRLRPLFETNYFRPIGESGNPVDFFPVLDFPFVLLFGLEFLLRTVAIS CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH RRYTGVNWLDAMLWRWYDVLLLLPFWRWLRVIPVTIRLGQAQLLDLERVRAQVSQGFVTN HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHH FAEDLTEVIVVRVINQIQVSIQRGSLPLLPAARTQRDYIDINNTNELEAIANLVFRIVLY HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHH RVLPQVQPELQQLLRYNLDGLLKQLPAMQTLEQLPGLGSLPGQLTEHLANELTTTTYKTL HHHHCCCHHHHHHHHHCHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH TGSFEDPVGSKLAAQLMQRFGEVLARELTQEHALEEIRSLLQDLLEEIKINYVERLSHED CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH LEEVMEQTRQLRQKAQQLEKDRRR HHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNAAQRILRRSVLRGRSRWLLLYEKGMALLALSNLCLVLFDMSYVPGRDFWLQGRVQIFG CCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEE AFGPPIPLPILSEETSRSPVTDLYDPIKGIEPNPETQRYLALVDELRQVTLRFGVESEAA CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH APILARLRELSDEMIETNPFQGANKTGQFVRILNLMREHIPEADSARAAFARFWTAEYLA HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH SADPADGIEFFQIRLRPLFETNYFRPIGESGNPVDFFPVLDFPFVLLFGLEFLLRTVAIS CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH RRYTGVNWLDAMLWRWYDVLLLLPFWRWLRVIPVTIRLGQAQLLDLERVRAQVSQGFVTN HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHH FAEDLTEVIVVRVINQIQVSIQRGSLPLLPAARTQRDYIDINNTNELEAIANLVFRIVLY HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHH RVLPQVQPELQQLLRYNLDGLLKQLPAMQTLEQLPGLGSLPGQLTEHLANELTTTTYKTL HHHHCCCHHHHHHHHHCHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH TGSFEDPVGSKLAAQLMQRFGEVLARELTQEHALEEIRSLLQDLLEEIKINYVERLSHED CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH LEEVMEQTRQLRQKAQQLEKDRRR HHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA