Click here to switch to the map view.

The map label for this gene is ureD [H]

Identifier: 86608359

GI number: 86608359

Start: 906381

End: 907163

Strand: Direct

Name: ureD [H]

Synonym: CYB_0878

Alternate gene names: 86608359

Gene position: 906381-907163 (Clockwise)

Preceding gene: 86608358

Following gene: 86608360

Centisome position: 29.75

GC content: 61.81

Gene sequence:

>783_bases
TTGAAGGCAACCCGCCGAGGCGAACATACCCGTATTTGGGAGTATTCTCAGGCTCCCCTGCAATGGCTGGGATCCCCTGG
GGAGCCACCTGTGTACTACCTGCGCAACCCCAACGGCGGCCTGCTGGGTGGGGATCGCCACCGGATCGAGATCGGGCTGG
GGCCAGGCTCGGCGCTGGAAATTCGCACCCAAGGGGCAATGCGGCTACATCCCGGCTTGATTCGGCAACAGGTCAAGGTC
AAGCTGGCCCCCACCAGCCAGTTGATCTGGATCCCTCACCCGACCATTCCGGGGGCAGGGGCAGACTTTCGCCAGCAGGT
GCAGATCGAACTGGATCCCACAGCCCGCCTGGCCTATGCCGAGATCTGGACTGCCGGACGGCTGGCCATGGACGAGCGCT
GGCAGTTTGAACATCTTGCCAACTGCTTGCAAGTTTGGGTCACTGCTGGGATCCCATCCTCCCCCGAGGGGAGAAAACTC
TGGCTGCAGGAACACATAGACCTGCACTTTCCCCATCGGCAGGTCTCCGCCGCGTCAGTGCTGGGATCCCATCTCTGTTG
GGGATCCCTGTACTTGCTGGGGGATTGGCCGGAACCCACTTGGCTGACCGTTCACATCAGCGGAACGGAGTCCCCATACT
GGCTGGTCAAGTCTCCGGATCCCATCTGTAAGGGTTGGATTCTGCGCCAGGTGGGGCCACAGGCAGAGGCCATTTGGCGG
CATTTTGGCCAGGTTGCACTACAGCTTGCTCAAGCCAAGGGTGGCTCACCCCAGGGGTGGTAG

Upstream 100 bases:

>100_bases
TGGAGCAGGTTCTCAGTTGGCTGGAGCGGGAGGTGCTGTTTCGGCCCATCAAGGCCGACCCCCCCTCGGTGAGCCGCCTG
TGAACTTCGGTAAGGCCATC

Downstream 100 bases:

>100_bases
ACTAAGGCTGACTCAAGCCAACTGGTTGACCCAAGGCCGGGACGGAGTCCTTTGAACGCTGCTCAACGGATTCTCAGACG
CTCTGTCCTCAGGGGGCGAA

Product: urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKATRRGEHTRIWEYSQAPLQWLGSPGEPPVYYLRNPNGGLLGGDRHRIEIGLGPGSALEIRTQGAMRLHPGLIRQQVKV
KLAPTSQLIWIPHPTIPGAGADFRQQVQIELDPTARLAYAEIWTAGRLAMDERWQFEHLANCLQVWVTAGIPSSPEGRKL
WLQEHIDLHFPHRQVSAASVLGSHLCWGSLYLLGDWPEPTWLTVHISGTESPYWLVKSPDPICKGWILRQVGPQAEAIWR
HFGQVALQLAQAKGGSPQGW

Sequences:

>Translated_260_residues
MKATRRGEHTRIWEYSQAPLQWLGSPGEPPVYYLRNPNGGLLGGDRHRIEIGLGPGSALEIRTQGAMRLHPGLIRQQVKV
KLAPTSQLIWIPHPTIPGAGADFRQQVQIELDPTARLAYAEIWTAGRLAMDERWQFEHLANCLQVWVTAGIPSSPEGRKL
WLQEHIDLHFPHRQVSAASVLGSHLCWGSLYLLGDWPEPTWLTVHISGTESPYWLVKSPDPICKGWILRQVGPQAEAIWR
HFGQVALQLAQAKGGSPQGW
>Mature_260_residues
MKATRRGEHTRIWEYSQAPLQWLGSPGEPPVYYLRNPNGGLLGGDRHRIEIGLGPGSALEIRTQGAMRLHPGLIRQQVKV
KLAPTSQLIWIPHPTIPGAGADFRQQVQIELDPTARLAYAEIWTAGRLAMDERWQFEHLANCLQVWVTAGIPSSPEGRKL
WLQEHIDLHFPHRQVSAASVLGSHLCWGSLYLLGDWPEPTWLTVHISGTESPYWLVKSPDPICKGWILRQVGPQAEAIWR
HFGQVALQLAQAKGGSPQGW

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter [H]

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002669 [H]

Pfam domain/function: PF01774 UreD [H]

EC number: NA

Molecular weight: Translated: 29130; Mature: 29130

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKATRRGEHTRIWEYSQAPLQWLGSPGEPPVYYLRNPNGGLLGGDRHRIEIGLGPGSALE
CCCCCCCCCCEEEECCCCCHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCEEE
IRTQGAMRLHPGLIRQQVKVKLAPTSQLIWIPHPTIPGAGADFRQQVQIELDPTARLAYA
EEECCCEEECHHHHCEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEHH
EIWTAGRLAMDERWQFEHLANCLQVWVTAGIPSSPEGRKLWLQEHIDLHFPHRQVSAASV
HHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEECCCHHHHHHHH
LGSHLCWGSLYLLGDWPEPTWLTVHISGTESPYWLVKSPDPICKGWILRQVGPQAEAIWR
HHHHHCEEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCHHHHHHHHHHCCCHHHHHHH
HFGQVALQLAQAKGGSPQGW
HHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKATRRGEHTRIWEYSQAPLQWLGSPGEPPVYYLRNPNGGLLGGDRHRIEIGLGPGSALE
CCCCCCCCCCEEEECCCCCHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCEEE
IRTQGAMRLHPGLIRQQVKVKLAPTSQLIWIPHPTIPGAGADFRQQVQIELDPTARLAYA
EEECCCEEECHHHHCEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEHH
EIWTAGRLAMDERWQFEHLANCLQVWVTAGIPSSPEGRKLWLQEHIDLHFPHRQVSAASV
HHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEECCCHHHHHHHH
LGSHLCWGSLYLLGDWPEPTWLTVHISGTESPYWLVKSPDPICKGWILRQVGPQAEAIWR
HHHHHCEEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCHHHHHHHHHHCCCHHHHHHH
HFGQVALQLAQAKGGSPQGW
HHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA