Click here to switch to the map view.

The map label for this gene is prc-1 [H]

Identifier: 86608304

GI number: 86608304

Start: 851516

End: 852811

Strand: Reverse

Name: prc-1 [H]

Synonym: CYB_0822

Alternate gene names: 86608304

Gene position: 852811-851516 (Counterclockwise)

Preceding gene: 86608308

Following gene: 86608303

Centisome position: 27.99

GC content: 59.49

Gene sequence:

>1296_bases
ATGAGAAAGCGTGGGTTTGTGGTCAGTGCAACGGCTGCAGTGATGACAGCGGTATCGCTGGTCGGCGTGCAGCTATCCAT
GCCGGGCTGGGCAGGGTTTCGCCGGGATCCCAAAGAGGTGGTGGACGAGGTTTGGCAAATTGTTAACCGGGAATATGTGG
ATCCGTCTTTTAATTCCCTGGATTGGGAAGCGGTGCGGCGGGATCTGCTCAGCCGAGAGTATGCCACCCGAGAAGATGCC
TACGCGGCCATCCGGGAAGCCCTGAAGAAACTCAACGATCCCTACACCCGATTTCTGGATCCGGATCAGTTTGCCAGCAT
GCAAATCGATACATCCGGCGAGCTGACCGGGGTGGGGATCACGCTGGGCATGGATCAGGAGACAAACGAGCTGGTGGTGA
TCTCCCCCATTGAAGGGTCTCCTGCCGACCGGGCTGGGATCAAATCCAAAGACGTGATCGTGCGCATCGACGACAAGTCC
ACCGAAGGCATGGACACCAACGCTGCAGTCAACCTCATTCGGGGCGAGCCGGGTACGCGGGTGCGGCTGACCATTCGCCG
CGAGGGGGAAGGGCTAAAGGTGTTCGATTTGGTGCGGGAAAGAATTGAGCTGGCCACCGTGCGCTACGAGGTTCACGAGG
AAAACGGCCTGCCCATTGGCTATATCCGGATTACCCAGTTTTCCGGCAACGCCGCCGAGAAGATGCGCCAAGCCATTCGC
GAGCTGGAAAAACAAGGGGTAGCCGCCTACGTTCTGGATTTGCGCGCCAACCCAGGGGGCCTGCTCTACTCCAGCGCCGA
GATTGCCCGCATGTGGATTAACCGGGGCAGCATTGTCTCGACGGTGAACCGCCAAGGGGAGCAGGATCGCCTGACGGCCA
ACAACACGGCCCTCACCGATAAACCTTTGGCCGTTTTGGTGGATGGTGGCTCGGCCAGCGCCAGCGAGATTCTGTCGGGG
GCTCTGCAGGATAACCGTCGCGCCGTGATTGTCGGCACGCAAACTTTCGGCAAGGGCCTGGTGCAGTCGGTGCATCCCCT
GTCCGATGGATCTGGGCTGGCGGTAACCATTGCCCGTTATCGCACTCCCAACGGTAACGACATCGACCACAAGGGCATTA
CCCCCGACATTTTGGTGGAATTGTCCGAGGAAGATCTGAAGCGGCTCAGCCAGAACCGAGAATTGGTGGCCACCCCAGCC
GACCCACAGTATGCTGCTGCCATCCAGGCTCTGCAGGCTCAGATCTCTGCCCGTCGGCAACAGGCCCAGGAGGTCATTCG
TTCCTCTTCACGTTAG

Upstream 100 bases:

>100_bases
GGAAGACCCTTGCTCGAAACCCAGTTCCCTGACAATTAGAGATCCACCTCTGGAGATCCACCTCGTCAACCTTGACTTTT
AGCGCCTTCCAGGAGAGCCA

Downstream 100 bases:

>100_bases
CCGGTGTTGGGGGCGGTTTTGATGGGTCTCAGATCTGGCACTCCTGAGACTGGGGTTAAGCCGAGGCCCAAGCTATTTAA
GACTATTAAGACTCTTCTCA

Product: C-terminal processing peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MRKRGFVVSATAAVMTAVSLVGVQLSMPGWAGFRRDPKEVVDEVWQIVNREYVDPSFNSLDWEAVRRDLLSREYATREDA
YAAIREALKKLNDPYTRFLDPDQFASMQIDTSGELTGVGITLGMDQETNELVVISPIEGSPADRAGIKSKDVIVRIDDKS
TEGMDTNAAVNLIRGEPGTRVRLTIRREGEGLKVFDLVRERIELATVRYEVHEENGLPIGYIRITQFSGNAAEKMRQAIR
ELEKQGVAAYVLDLRANPGGLLYSSAEIARMWINRGSIVSTVNRQGEQDRLTANNTALTDKPLAVLVDGGSASASEILSG
ALQDNRRAVIVGTQTFGKGLVQSVHPLSDGSGLAVTIARYRTPNGNDIDHKGITPDILVELSEEDLKRLSQNRELVATPA
DPQYAAAIQALQAQISARRQQAQEVIRSSSR

Sequences:

>Translated_431_residues
MRKRGFVVSATAAVMTAVSLVGVQLSMPGWAGFRRDPKEVVDEVWQIVNREYVDPSFNSLDWEAVRRDLLSREYATREDA
YAAIREALKKLNDPYTRFLDPDQFASMQIDTSGELTGVGITLGMDQETNELVVISPIEGSPADRAGIKSKDVIVRIDDKS
TEGMDTNAAVNLIRGEPGTRVRLTIRREGEGLKVFDLVRERIELATVRYEVHEENGLPIGYIRITQFSGNAAEKMRQAIR
ELEKQGVAAYVLDLRANPGGLLYSSAEIARMWINRGSIVSTVNRQGEQDRLTANNTALTDKPLAVLVDGGSASASEILSG
ALQDNRRAVIVGTQTFGKGLVQSVHPLSDGSGLAVTIARYRTPNGNDIDHKGITPDILVELSEEDLKRLSQNRELVATPA
DPQYAAAIQALQAQISARRQQAQEVIRSSSR
>Mature_431_residues
MRKRGFVVSATAAVMTAVSLVGVQLSMPGWAGFRRDPKEVVDEVWQIVNREYVDPSFNSLDWEAVRRDLLSREYATREDA
YAAIREALKKLNDPYTRFLDPDQFASMQIDTSGELTGVGITLGMDQETNELVVISPIEGSPADRAGIKSKDVIVRIDDKS
TEGMDTNAAVNLIRGEPGTRVRLTIRREGEGLKVFDLVRERIELATVRYEVHEENGLPIGYIRITQFSGNAAEKMRQAIR
ELEKQGVAAYVLDLRANPGGLLYSSAEIARMWINRGSIVSTVNRQGEQDRLTANNTALTDKPLAVLVDGGSASASEILSG
ALQDNRRAVIVGTQTFGKGLVQSVHPLSDGSGLAVTIARYRTPNGNDIDHKGITPDILVELSEEDLKRLSQNRELVATPA
DPQYAAAIQALQAQISARRQQAQEVIRSSSR

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=352, Percent_Identity=31.25, Blast_Score=137, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 47330; Mature: 47330

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKRGFVVSATAAVMTAVSLVGVQLSMPGWAGFRRDPKEVVDEVWQIVNREYVDPSFNSL
CCCCCEEEEHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
DWEAVRRDLLSREYATREDAYAAIREALKKLNDPYTRFLDPDQFASMQIDTSGELTGVGI
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHCCCCCHHCEEEECCCCCEEEEEE
TLGMDQETNELVVISPIEGSPADRAGIKSKDVIVRIDDKSTEGMDTNAAVNLIRGEPGTR
EEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCE
VRLTIRREGEGLKVFDLVRERIELATVRYEVHEENGLPIGYIRITQFSGNAAEKMRQAIR
EEEEEEECCCCCHHHHHHHHHHHHHHEEEEEECCCCCEEEEEEEEEECCCHHHHHHHHHH
ELEKQGVAAYVLDLRANPGGLLYSSAEIARMWINRGSIVSTVNRQGEQDRLTANNTALTD
HHHHCCCEEEEEEEECCCCCEEECHHHHHHHHHCCCCHHHHHHCCCCCCCEECCCCEECC
KPLAVLVDGGSASASEILSGALQDNRRAVIVGTQTFGKGLVQSVHPLSDGSGLAVTIARY
CCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCCCCCCEEEEEEEE
RTPNGNDIDHKGITPDILVELSEEDLKRLSQNRELVATPADPQYAAAIQALQAQISARRQ
ECCCCCCCCCCCCCHHHEEEECHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
QAQEVIRSSSR
HHHHHHHCCCC
>Mature Secondary Structure
MRKRGFVVSATAAVMTAVSLVGVQLSMPGWAGFRRDPKEVVDEVWQIVNREYVDPSFNSL
CCCCCEEEEHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
DWEAVRRDLLSREYATREDAYAAIREALKKLNDPYTRFLDPDQFASMQIDTSGELTGVGI
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHCCCCCHHCEEEECCCCCEEEEEE
TLGMDQETNELVVISPIEGSPADRAGIKSKDVIVRIDDKSTEGMDTNAAVNLIRGEPGTR
EEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCE
VRLTIRREGEGLKVFDLVRERIELATVRYEVHEENGLPIGYIRITQFSGNAAEKMRQAIR
EEEEEEECCCCCHHHHHHHHHHHHHHEEEEEECCCCCEEEEEEEEEECCCHHHHHHHHHH
ELEKQGVAAYVLDLRANPGGLLYSSAEIARMWINRGSIVSTVNRQGEQDRLTANNTALTD
HHHHCCCEEEEEEEECCCCCEEECHHHHHHHHHCCCCHHHHHHCCCCCCCEECCCCEECC
KPLAVLVDGGSASASEILSGALQDNRRAVIVGTQTFGKGLVQSVHPLSDGSGLAVTIARY
CCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCCCCCCEEEEEEEE
RTPNGNDIDHKGITPDILVELSEEDLKRLSQNRELVATPADPQYAAAIQALQAQISARRQ
ECCCCCCCCCCCCCHHHEEEECHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
QAQEVIRSSSR
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]