Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86608253
Identifier: 86608253
GI number: 86608253
Start: 791275
End: 791643
Strand: Reverse
Name: 86608253
Synonym: CYB_0768
Alternate gene names: NA
Gene position: 791643-791275 (Counterclockwise)
Preceding gene: 86608254
Following gene: 86608251
Centisome position: 25.98
GC content: 60.7
Gene sequence:
>369_bases ATGAAACAGCGACTCGGCCTACCTTTCCCCAAGGGATCCCTGGTGTTCTTGCTGTGTTTGAGCCTGGCCCTAGCAGGGTG TGGGCCACTGGCGCGTCTGGGCATCGGCACAACCCCCATCGCCCAGATCGAACAAAATCCCTCCCGCTACACCAATGTGT ATATCCGCGGTCGCGTGGTGAACCAGATAGGAGTGTTCGGCCAGGGCGTGTATGAGATCCAAGACAACAGCGGCTCCCTC TGGGTCATCACCGACAAGGGCCTACCGGCCATGAACAGCACTGTAACCGTGCGCGGCAAGGCCCAAGAGGGGATTGTGGT GGGGGGACGCAGCTTCGGGGTCTCGTTGGTGGAAGCCGAGCGCTTCTAG
Upstream 100 bases:
>100_bases GCCAACTGCACTTCGGCATTGGCGAGAAGTTCTAACTTGGCCGTGGATTTCCCTGCCGGCTTGCTATGGTGGGAGCAGGT GCTCGTAATGGAAGCAACCC
Downstream 100 bases:
>100_bases CCTGCCCCCAAAGCCAGCATCGAAACACGGCCTGCCAAGGTTTTGGCAATTTGCCGAAGCGCCTGGGCCGAGGCTGACTC AGGCTGGCTGATGACGATGG
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 122; Mature: 122
Protein sequence:
>122_residues MKQRLGLPFPKGSLVFLLCLSLALAGCGPLARLGIGTTPIAQIEQNPSRYTNVYIRGRVVNQIGVFGQGVYEIQDNSGSL WVITDKGLPAMNSTVTVRGKAQEGIVVGGRSFGVSLVEAERF
Sequences:
>Translated_122_residues MKQRLGLPFPKGSLVFLLCLSLALAGCGPLARLGIGTTPIAQIEQNPSRYTNVYIRGRVVNQIGVFGQGVYEIQDNSGSL WVITDKGLPAMNSTVTVRGKAQEGIVVGGRSFGVSLVEAERF >Mature_122_residues MKQRLGLPFPKGSLVFLLCLSLALAGCGPLARLGIGTTPIAQIEQNPSRYTNVYIRGRVVNQIGVFGQGVYEIQDNSGSL WVITDKGLPAMNSTVTVRGKAQEGIVVGGRSFGVSLVEAERF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13022; Mature: 13022
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQRLGLPFPKGSLVFLLCLSLALAGCGPLARLGIGTTPIAQIEQNPSRYTNVYIRGRVV CCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCHHEECCCCCCEEEEEEEEEEE NQIGVFGQGVYEIQDNSGSLWVITDKGLPAMNSTVTVRGKAQEGIVVGGRSFGVSLVEAE EECCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCCEEECCCCCCEEEEEEC RF CC >Mature Secondary Structure MKQRLGLPFPKGSLVFLLCLSLALAGCGPLARLGIGTTPIAQIEQNPSRYTNVYIRGRVV CCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCHHEECCCCCCEEEEEEEEEEE NQIGVFGQGVYEIQDNSGSLWVITDKGLPAMNSTVTVRGKAQEGIVVGGRSFGVSLVEAE EECCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCCEEECCCCCCEEEEEEC RF CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA