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The map label for this gene is rbgA [H]

Identifier: 86608130

GI number: 86608130

Start: 652537

End: 653388

Strand: Direct

Name: rbgA [H]

Synonym: CYB_0642

Alternate gene names: 86608130

Gene position: 652537-653388 (Clockwise)

Preceding gene: 86608129

Following gene: 86608132

Centisome position: 21.42

GC content: 63.03

Gene sequence:

>852_bases
ATGAGTTCTCCGGCCATCCAGTGGTATCCCGGCCACATTGCCAAGGCGATCGGCCAGTTGCGGGAAGAGTTGCAGCGGGT
GGATGCAGTCATCGAGGTGTTGGATGCGCGGATCCCGTTGGCCAGTCGTCATCCTGAGCTGGGCCGGTGGCTGGGGGAAA
AACCTCGCCTCCTGGCTCTGAACAGGGCGGACTGCATTGAGGCTGGGGATCTGAAAGCTTGGCAGGAGTATTTTTTACGG
CAAGGGATCCCTGTCTATCCCACCAATGGCCGCTCAGGAGAAGGGGTGAATCGCCTCAAGCAGGCGGTCTTGCACTTGGG
GCAATCGGTCAACACGCGGCGTCAACAGCGGGGCATGCGACCGCGGGCCGTTCGGGCGGTGGTGGTGGGCTTTCCCAATG
TGGGCAAATCTGCTTTGCTGAATCGACTGTTGGGGCGGCGGGCAGCTGAGAGCGCAGCACGTCCTGGGGTGACGCGGCAA
CTGCGGTGGGTGCGGCTGGGGGGAGAGTTGGATCTGTTGGACTCGCCGGGCATCATACCGCCCTCTCTGCCGGATCAACA
GGCGGCCTCTCTATTGGCCATCTGCGATGACATCGGCGAAGCGGCCTACGATCCCGAACGGGTGGCGGCCCACTTTTTGG
ATCAAGTGCTGAGGGTGCAGCCCCAAGCCGGATCTCTCTTGCAAAAGCGCTACGGTTGGCCGGATCCGATCCCTCCCGGT
GGTGCTGCAGTGCAGGAGTTGGCCGAGCGGCGGTATCAAGGGGATCCCCAGCGGGCGGCACGGCAAGTTCTCAACGACTA
CCGCAAGGGCTTGCTGGGGCCGCTGGCCTTGGAACTCCCTCCCAAGGCTTGA

Upstream 100 bases:

>100_bases
ATTGGCTACTTCAGCCGGCAGGTCGAGCCTCTTTTGGGGAATCGGGCTAGATTGGATCCCACTGTTGATTTCTGCTGTCC
ACTTCTAGGGTTCTGGCGGC

Downstream 100 bases:

>100_bases
GCCCCTTAGAAGAAATCACGAAAGAAAGTCACGTTGTTGCTATGCCCACGGCAGGGAAACCGCTGCTGTGGGGCGTTGAC
TTTTCCCGAAACTGTCTACA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSSPAIQWYPGHIAKAIGQLREELQRVDAVIEVLDARIPLASRHPELGRWLGEKPRLLALNRADCIEAGDLKAWQEYFLR
QGIPVYPTNGRSGEGVNRLKQAVLHLGQSVNTRRQQRGMRPRAVRAVVVGFPNVGKSALLNRLLGRRAAESAARPGVTRQ
LRWVRLGGELDLLDSPGIIPPSLPDQQAASLLAICDDIGEAAYDPERVAAHFLDQVLRVQPQAGSLLQKRYGWPDPIPPG
GAAVQELAERRYQGDPQRAARQVLNDYRKGLLGPLALELPPKA

Sequences:

>Translated_283_residues
MSSPAIQWYPGHIAKAIGQLREELQRVDAVIEVLDARIPLASRHPELGRWLGEKPRLLALNRADCIEAGDLKAWQEYFLR
QGIPVYPTNGRSGEGVNRLKQAVLHLGQSVNTRRQQRGMRPRAVRAVVVGFPNVGKSALLNRLLGRRAAESAARPGVTRQ
LRWVRLGGELDLLDSPGIIPPSLPDQQAASLLAICDDIGEAAYDPERVAAHFLDQVLRVQPQAGSLLQKRYGWPDPIPPG
GAAVQELAERRYQGDPQRAARQVLNDYRKGLLGPLALELPPKA
>Mature_282_residues
SSPAIQWYPGHIAKAIGQLREELQRVDAVIEVLDARIPLASRHPELGRWLGEKPRLLALNRADCIEAGDLKAWQEYFLRQ
GIPVYPTNGRSGEGVNRLKQAVLHLGQSVNTRRQQRGMRPRAVRAVVVGFPNVGKSALLNRLLGRRAAESAARPGVTRQL
RWVRLGGELDLLDSPGIIPPSLPDQQAASLLAICDDIGEAAYDPERVAAHFLDQVLRVQPQAGSLLQKRYGWPDPIPPGG
AAVQELAERRYQGDPQRAARQVLNDYRKGLLGPLALELPPKA

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=308, Percent_Identity=28.8961038961039, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI296317324, Length=209, Percent_Identity=29.6650717703349, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI9506611, Length=209, Percent_Identity=29.6650717703349, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI45643129, Length=191, Percent_Identity=27.7486910994764, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI45643127, Length=191, Percent_Identity=27.7486910994764, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI45593130, Length=191, Percent_Identity=27.7486910994764, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7019419, Length=288, Percent_Identity=25.3472222222222, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193211047, Length=209, Percent_Identity=33.4928229665072, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17534827, Length=184, Percent_Identity=31.5217391304348, Blast_Score=87, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6320842, Length=171, Percent_Identity=35.0877192982456, Blast_Score=83, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6321339, Length=325, Percent_Identity=24, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6324381, Length=271, Percent_Identity=24.3542435424354, Blast_Score=76, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6323744, Length=234, Percent_Identity=27.3504273504274, Blast_Score=69, Evalue=9e-13,
Organism=Drosophila melanogaster, GI85815858, Length=311, Percent_Identity=27.0096463022508, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI28572990, Length=186, Percent_Identity=31.7204301075269, Blast_Score=91, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 31176; Mature: 31045

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPAIQWYPGHIAKAIGQLREELQRVDAVIEVLDARIPLASRHPELGRWLGEKPRLLAL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEE
NRADCIEAGDLKAWQEYFLRQGIPVYPTNGRSGEGVNRLKQAVLHLGQSVNTRRQQRGMR
CCHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCC
PRAVRAVVVGFPNVGKSALLNRLLGRRAAESAARPGVTRQLRWVRLGGELDLLDSPGIIP
HHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEECCCEEECCCCCCCC
PSLPDQQAASLLAICDDIGEAAYDPERVAAHFLDQVLRVQPQAGSLLQKRYGWPDPIPPG
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCC
GAAVQELAERRYQGDPQRAARQVLNDYRKGLLGPLALELPPKA
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCC
>Mature Secondary Structure 
SSPAIQWYPGHIAKAIGQLREELQRVDAVIEVLDARIPLASRHPELGRWLGEKPRLLAL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEE
NRADCIEAGDLKAWQEYFLRQGIPVYPTNGRSGEGVNRLKQAVLHLGQSVNTRRQQRGMR
CCHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCC
PRAVRAVVVGFPNVGKSALLNRLLGRRAAESAARPGVTRQLRWVRLGGELDLLDSPGIIP
HHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEECCCEEECCCCCCCC
PSLPDQQAASLLAICDDIGEAAYDPERVAAHFLDQVLRVQPQAGSLLQKRYGWPDPIPPG
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCC
GAAVQELAERRYQGDPQRAARQVLNDYRKGLLGPLALELPPKA
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]