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The map label for this gene is sigK [H]

Identifier: 86608074

GI number: 86608074

Start: 588838

End: 589461

Strand: Direct

Name: sigK [H]

Synonym: CYB_0582

Alternate gene names: 86608074

Gene position: 588838-589461 (Clockwise)

Preceding gene: 86608073

Following gene: 86608075

Centisome position: 19.33

GC content: 60.74

Gene sequence:

>624_bases
GTGAGAGATTGGTCATCCCGCGCCGATTGGGAGCTGATGGAAGCGCTCAAGGCGGGGCAACCTGCTGCTCTGGCTGCGCT
CTACGATCGCTATGCCGGCTTGGTCTATGGGCTGGCCTTCAAGATCCTGGGCCACGTGGCCGAGGCAGAAGACCTGACTC
AGGAGGTGTTTGTCGAGCTGTGGCGCAAGGTTGGCTGTGATCCAAGGACTCCGTCCGAGTCGCGCGAGCGGCGGGGATCC
CTGAGCAGTTTTTTGTGCATCCTGACCCGCTCGCGGGCCATTGACCGTCTGCGTTCTCAGGGCAGCCACCAACTTCTTTT
GAAACGCTGGCAGACCATTCTCAGCGCCGATCGCGTCAGCGGGACGGAGTCCTTTAGCAAGACTCGGTTCCCTTTTGAGC
AGGTTTCCATCGAGGAGCGGCGGCAAGCGGTGCAAGCGGCCCTCAGCCAATTGCCCGAAAACCAACGGCAGATCCTGGAG
TTGCTCTATTACCAAGGGTTGAGCCAGGCGGACATTGCTCGCCAATTGGGGATCCCGTTGGGGACGGTTAAGACCCGCTC
TCGCCAAGCTCTCTGCAAATTGCGGGGATCCCTGCGCGCCCTTCTGGGTTTCTGCTCGCGTTAG

Upstream 100 bases:

>100_bases
CGCTGGCGCGATCGGGCAGGTTTATCCTCTAGTTGTGTGGGGCGAAACTGGGTGTAGCATGGGTGAGCAACCAGGGACTC
CGTCCCGCTGGCGTGAGCGG

Downstream 100 bases:

>100_bases
CGGGACCGCGTCCTTTCGCGTTAGCGGGACGGAGTCCTAGGTTTGGAGTTGAGTTCTGGTGTCGGGATGGCCATGTCTGA
TCGCGTCAGCGGGACGGAGT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MRDWSSRADWELMEALKAGQPAALAALYDRYAGLVYGLAFKILGHVAEAEDLTQEVFVELWRKVGCDPRTPSESRERRGS
LSSFLCILTRSRAIDRLRSQGSHQLLLKRWQTILSADRVSGTESFSKTRFPFEQVSIEERRQAVQAALSQLPENQRQILE
LLYYQGLSQADIARQLGIPLGTVKTRSRQALCKLRGSLRALLGFCSR

Sequences:

>Translated_207_residues
MRDWSSRADWELMEALKAGQPAALAALYDRYAGLVYGLAFKILGHVAEAEDLTQEVFVELWRKVGCDPRTPSESRERRGS
LSSFLCILTRSRAIDRLRSQGSHQLLLKRWQTILSADRVSGTESFSKTRFPFEQVSIEERRQAVQAALSQLPENQRQILE
LLYYQGLSQADIARQLGIPLGTVKTRSRQALCKLRGSLRALLGFCSR
>Mature_207_residues
MRDWSSRADWELMEALKAGQPAALAALYDRYAGLVYGLAFKILGHVAEAEDLTQEVFVELWRKVGCDPRTPSESRERRGS
LSSFLCILTRSRAIDRLRSQGSHQLLLKRWQTILSADRVSGTESFSKTRFPFEQVSIEERRQAVQAALSQLPENQRQILE
LLYYQGLSQADIARQLGIPLGTVKTRSRQALCKLRGSLRALLGFCSR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 23457; Mature: 23457

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDWSSRADWELMEALKAGQPAALAALYDRYAGLVYGLAFKILGHVAEAEDLTQEVFVEL
CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRKVGCDPRTPSESRERRGSLSSFLCILTRSRAIDRLRSQGSHQLLLKRWQTILSADRVS
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
GTESFSKTRFPFEQVSIEERRQAVQAALSQLPENQRQILELLYYQGLSQADIARQLGIPL
CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCC
GTVKTRSRQALCKLRGSLRALLGFCSR
CHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRDWSSRADWELMEALKAGQPAALAALYDRYAGLVYGLAFKILGHVAEAEDLTQEVFVEL
CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRKVGCDPRTPSESRERRGSLSSFLCILTRSRAIDRLRSQGSHQLLLKRWQTILSADRVS
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
GTESFSKTRFPFEQVSIEERRQAVQAALSQLPENQRQILELLYYQGLSQADIARQLGIPL
CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCC
GTVKTRSRQALCKLRGSLRALLGFCSR
CHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA