Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is fdx [C]
Identifier: 86608062
GI number: 86608062
Start: 579742
End: 580272
Strand: Direct
Name: fdx [C]
Synonym: CYB_0571
Alternate gene names: 86608062
Gene position: 579742-580272 (Clockwise)
Preceding gene: 86608060
Following gene: 86608064
Centisome position: 19.03
GC content: 57.06
Gene sequence:
>531_bases TTGCCCGCCGGGGTTTTTTGTCTGCCCTTAATGTGGATCCCGTCTATGGTTAAACAAATCCGGCTAGAGCCTTTATCTCG TGTCTCGGAGGTCGATACCTACAGCAATCTGCTGTCGGCCATTTTGTCGGAGGAGCTGCAGGTTTCGCGGGAATGTAACG GTCGCGGCCTCTGCGCCACCTGTCATGTTTACGTCAAAGAGGGAATGGAAAGCCTCACTCCCATCACCCCCCGCGAGGCC AAGACTCTGGAGACCATTACCAGCGCCCGCAGCAATTCCCGGCTGGCCTGTCAGGCGCGGGTGGTTTCCGATGGCGTGGT GGTGGAGCTGCCGCCGGGGATGTACGTGAACTCGCTGAGGGATATCGAAGTGCTCATCGGTCGGCGGGCCGAACAAGACC TGCTGCACCCACGGACGGGGAAGGTTTTGGTGGAGCAGGGCAAGATCATCACTCGCTCTACTGTTAAGCAGCTAGAAAAT GAAGATTTCCGCATCATCGGCAGTACACTTGCCCAAACTCGGGAAGTTTGA
Upstream 100 bases:
>100_bases TAATCGACTGGGAAATCAGGTGTTGCCGTAGACCTGCAGAAGGACTGCAGGGAAGGGAGTTAATTGTTGTGATTTGTTTG CGTTGCTTTTGCAGTAGATC
Downstream 100 bases:
>100_bases TGGATTGTCGATGTTCAGGGATCCCTTGGGCTCGGCAGGTGTTGTTTTATAAACAATCAAACAAGAGTTGAACAATGTTG GATCCCTCAGATAGCTGACA
Product: iron-sulfur cluster-binding protein
Products: NA
Alternate protein names: Ferredoxin 2Fe-2S Type
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MPAGVFCLPLMWIPSMVKQIRLEPLSRVSEVDTYSNLLSAILSEELQVSRECNGRGLCATCHVYVKEGMESLTPITPREA KTLETITSARSNSRLACQARVVSDGVVVELPPGMYVNSLRDIEVLIGRRAEQDLLHPRTGKVLVEQGKIITRSTVKQLEN EDFRIIGSTLAQTREV
Sequences:
>Translated_176_residues MPAGVFCLPLMWIPSMVKQIRLEPLSRVSEVDTYSNLLSAILSEELQVSRECNGRGLCATCHVYVKEGMESLTPITPREA KTLETITSARSNSRLACQARVVSDGVVVELPPGMYVNSLRDIEVLIGRRAEQDLLHPRTGKVLVEQGKIITRSTVKQLEN EDFRIIGSTLAQTREV >Mature_175_residues PAGVFCLPLMWIPSMVKQIRLEPLSRVSEVDTYSNLLSAILSEELQVSRECNGRGLCATCHVYVKEGMESLTPITPREAK TLETITSARSNSRLACQARVVSDGVVVELPPGMYVNSLRDIEVLIGRRAEQDLLHPRTGKVLVEQGKIITRSTVKQLENE DFRIIGSTLAQTREV
Specific function: Ferredoxin Are Iron-Sulfur Proteins That Transfer Electrons In A Wide Variety Of Metabolic Reactions. Although The Function Of This Ferredoxin Is Unknown It Is Probable That It Has A Role As A Cellular Electron Transfer Protein. Involved In The In Vivo As
COG id: COG0633
COG function: function code C; Ferredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19551; Mature: 19420
Theoretical pI: Translated: 7.25; Mature: 7.25
Prosite motif: PS51085 2FE2S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAGVFCLPLMWIPSMVKQIRLEPLSRVSEVDTYSNLLSAILSEELQVSRECNGRGLCAT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH CHVYVKEGMESLTPITPREAKTLETITSARSNSRLACQARVVSDGVVVELPPGMYVNSLR HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEECCCHHHHHHH DIEVLIGRRAEQDLLHPRTGKVLVEQGKIITRSTVKQLENEDFRIIGSTLAQTREV HHHHHHCCCCHHHHCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEHHHHHHHHCCC >Mature Secondary Structure PAGVFCLPLMWIPSMVKQIRLEPLSRVSEVDTYSNLLSAILSEELQVSRECNGRGLCAT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH CHVYVKEGMESLTPITPREAKTLETITSARSNSRLACQARVVSDGVVVELPPGMYVNSLR HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEECCCHHHHHHH DIEVLIGRRAEQDLLHPRTGKVLVEQGKIITRSTVKQLENEDFRIIGSTLAQTREV HHHHHHCCCCHHHHCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: 2Fe-2S Cluster. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA