Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86608064
Identifier: 86608064
GI number: 86608064
Start: 580504
End: 581184
Strand: Direct
Name: 86608064
Synonym: CYB_0572
Alternate gene names: NA
Gene position: 580504-581184 (Clockwise)
Preceding gene: 86608062
Following gene: 86608065
Centisome position: 19.05
GC content: 55.07
Gene sequence:
>681_bases ATGGCCACCACATCTCGACCGGATCCCCGTCCTGCAGTCACCATGCCTGTGGGCCGTGACAAGCATGCTCACTACAGTTA CCGCGATTTCTTTCGCTTCAACCGAGATCAGGGCACGATTATCGATTGGAACAACACCCAAAATCTGCTGTTGAGCGAAG ACTTTATTGTGGGCTTGCAAACAGGCCTGGAACGGGAAGTGGGGGATGCTTCGGCGGCGGTGATGTACACCATTGGCAGA GATTGGGGCATCCGCGATGCCAAGCACTTCTCCGAGTGGTACGAGCGGGAGTATGGGATTGGCGTAAAACAGTCCAACCT TTTGTTTTTGCTGGAGACTTGGTGGTGGCCTTTTACGGCTCAGGGCTGGGGCAAGTGGGAGGTGGAAACCGAATCCAAAC AAAAAGGCTTCCTGTTTATCAACTTGTTTGACTCGATGGTGGCTCGCACCCTTGGGGATGTGGGCAAGCCGGTTTGTCAT CTCTATGCCGGGCTATTTGCCGGGTTTTTCACCGCTATGACTTCCCGCGAGCTGGCCTGCATCGAGATCCAGTGCTACGC CATGGGGGAAACCTACTGCAAATTCCTGTTGGGCGGGCAAGAACGCATTGATGCCGCCAATTTTTGGATCACCGAAGGGG CCAGCGCCCGCGAGATCGAGCAGCGTTTGCACCAGTTGTGA
Upstream 100 bases:
>100_bases TGACTCATTGGCATTGTCTGGCCCAGTTGATCCCTACAAATCCCACCAAATCCTGTTGCTTTGCAATCTAGAATTATCCA TTTTTTATCAGGAGAGCGCC
Downstream 100 bases:
>100_bases GGCTTGCTTGTGGCTTTTGAAGGCTCTCTGGGATCCCTCGACACTTTGGAGAAACGCCCATGGTCACCTTCAACTTAGAC ACCGATCTGGACTTAACCCA
Product: bacteriochlorophyll 4-vinyl reductase
Products: NA
Alternate protein names: 4-Vinyl Reductase 4VR; Bacteriochlorophyll 4-Vinyl Reductase
Number of amino acids: Translated: 226; Mature: 225
Protein sequence:
>226_residues MATTSRPDPRPAVTMPVGRDKHAHYSYRDFFRFNRDQGTIIDWNNTQNLLLSEDFIVGLQTGLEREVGDASAAVMYTIGR DWGIRDAKHFSEWYEREYGIGVKQSNLLFLLETWWWPFTAQGWGKWEVETESKQKGFLFINLFDSMVARTLGDVGKPVCH LYAGLFAGFFTAMTSRELACIEIQCYAMGETYCKFLLGGQERIDAANFWITEGASAREIEQRLHQL
Sequences:
>Translated_226_residues MATTSRPDPRPAVTMPVGRDKHAHYSYRDFFRFNRDQGTIIDWNNTQNLLLSEDFIVGLQTGLEREVGDASAAVMYTIGR DWGIRDAKHFSEWYEREYGIGVKQSNLLFLLETWWWPFTAQGWGKWEVETESKQKGFLFINLFDSMVARTLGDVGKPVCH LYAGLFAGFFTAMTSRELACIEIQCYAMGETYCKFLLGGQERIDAANFWITEGASAREIEQRLHQL >Mature_225_residues ATTSRPDPRPAVTMPVGRDKHAHYSYRDFFRFNRDQGTIIDWNNTQNLLLSEDFIVGLQTGLEREVGDASAAVMYTIGRD WGIRDAKHFSEWYEREYGIGVKQSNLLFLLETWWWPFTAQGWGKWEVETESKQKGFLFINLFDSMVARTLGDVGKPVCHL YAGLFAGFFTAMTSRELACIEIQCYAMGETYCKFLLGGQERIDAANFWITEGASAREIEQRLHQL
Specific function: Unknown
COG id: COG1719
COG function: function code R; Predicted hydrocarbon binding protein (contains V4R domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26007; Mature: 25875
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATTSRPDPRPAVTMPVGRDKHAHYSYRDFFRFNRDQGTIIDWNNTQNLLLSEDFIVGLQ CCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCEEEECCEEEEHH TGLEREVGDASAAVMYTIGRDWGIRDAKHFSEWYEREYGIGVKQSNLLFLLETWWWPFTA HCCCHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEC QGWGKWEVETESKQKGFLFINLFDSMVARTLGDVGKPVCHLYAGLFAGFFTAMTSRELAC CCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEE IEIQCYAMGETYCKFLLGGQERIDAANFWITEGASAREIEQRLHQL EEEEEEECCHHHHHHHHCCHHHCCHHHEEEECCCCHHHHHHHHHCC >Mature Secondary Structure ATTSRPDPRPAVTMPVGRDKHAHYSYRDFFRFNRDQGTIIDWNNTQNLLLSEDFIVGLQ CCCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCEEEECCEEEEHH TGLEREVGDASAAVMYTIGRDWGIRDAKHFSEWYEREYGIGVKQSNLLFLLETWWWPFTA HCCCHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEC QGWGKWEVETESKQKGFLFINLFDSMVARTLGDVGKPVCHLYAGLFAGFFTAMTSRELAC CCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEE IEIQCYAMGETYCKFLLGGQERIDAANFWITEGASAREIEQRLHQL EEEEEEECCHHHHHHHHCCHHHCCHHHEEEECCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA