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The map label for this gene is yxkH [H]

Identifier: 86607671

GI number: 86607671

Start: 180951

End: 183122

Strand: Reverse

Name: yxkH [H]

Synonym: CYB_0169

Alternate gene names: 86607671

Gene position: 183122-180951 (Counterclockwise)

Preceding gene: 86607672

Following gene: 86607660

Centisome position: 6.01

GC content: 62.02

Gene sequence:

>2172_bases
GTGATCCTGCTGGGGTTTGGGACTGGAGCCCTGGTAGCCTGGGCAACTGCTCATCCCGATTGGGTCAGCCGCCTGCCGGG
GCTCTCGCCACCTCTAGCGGAGATCCCTGCCCCCCGCGCCCACGCTAAAGCGGCTCAACAGCGCTTGCCCATCTCCTTAG
AGACCCAACTGGAACGGGATCCCTTTGCTTTGGATCCCTTGGCCAGCCTTTCTTATGTGCCCGCCATCATGTATCACGAT
GTGGTGGCTGGCCGCAAGCAGGTCTGGTTCGACACTACGGCGGCGGAGCTGCGGCAACACTTTGAGGCCATTAAGCAGGC
GGGGTTGACCCCCATCCACATCGACCAACTGTACAAACACCTGCGGGACGGGGATCCCTTGCCCGAAAAAGCCATTTTGC
TCACTTTTGACGACGCCTACCTGGGCCTGTACGAGAACGCCTACCCCCTTTTGAAGGAGTACAACTACCCCGCCACCTAC
TTTGTGCAAACCGGCTTTGTCGGCGTGCCCACCAGCAAGGATCACTTCACCTGGGATCAGATGCGGGAGATGGATGCCAG
CGGGCTGATCGACTTTGCCGCCCATACCGTCAACCATCCTCCTGACCTGCGGGTGCTAGACGATGCCCGTCTGCGGCGAG
AGGTGTTTGACTGCAAGGCCAAGTTGGAGCAGGAGCTGGGCCACCCCATCCACTACTTTGCCTATCCCGAAGGCAACCGG
GACGAGCGGGTGAAGCAATACCTGGCCGATGCCGGTTACCGGATGTCTTTTACGATGGATCCCGGTTTTACAGGACAATC
GCCCAACTTGCTGGAGGTGCGACGCTTTAACCAGTTTCGCATCACCGAGGCCATCATTGGCGCCCGCACCTTTAGCCTCA
ACCGCAGCCCCGACTACCGGCTGGATGTGACCCAACCGTTGGCCTTGACCGACGAAGTGATCAACCAGGTGCGTGTTCTC
ACCCTTCGCGGCGGGCGGGCGGCTACGGTGCATGCGGAGCGGCGCTACGAGGTCAGCACCCTGGCCCAGCGCTACCAGGC
CGATGCCGGCATCAATGGCAGCTTTTTCTCCATCCCTTGGATCAACTCTGCCAGCAATGTCATGGTGGGGCCGGCGATGG
CTGCCAACCACAAGACCTTCATCCCCGGTCGTCCCGAAGATGACCAGGCAATCCGCGGCCGGCCGCTGGTGCTGCTGGGC
AGGGATCGCCTCCGCTTTGTGCCCTTTGATCCCGACACCATGACCCACTTGGAGAACATCCGCCAGTTGATGCCGGATGT
CACGGATCTGTTTGTGGCCGGTCTGTGGCTGGTTAAGGATGGCCATGCCCTCTCTCCGGCGGAGATCAACTCGTTCCGCC
TTGCCAGCGCTGCTGAGTTTCGCCCCAGAGCTTTCTTTGGGGTAGATGACCAGGAGCGGGTGGTGATCGGAGTTACCAAA
ACCCACGTCAACGCCGCCATCCTGGCCAGTCTGCTGCCCAAAACCGGGATCCGGGAAGCCGTGCTGCTGGACTCTGGCTT
TAGCACCTCCCTGGTCTACCAAGGGGAGATCCTCGCCACCGGCCATGCCGGTCCCAACCAGCCCAGCCGTCCTGTGCCCC
ATGCCATCTTGCTCTACGACCTGACTCGCCTTTGGCGGGAGGATCCCCATCCCGAGGCCAAGGCTGGCTCTGAGGGAGAT
CAGCTGGAAGGGCTAGTGCAACTTTTGCCAGCTAGCGACCAAGATGCAGCCAAAGCCCAGCTAGAGAGCGTCTTGGCCAG
CCAACGCACTTTGAGGCGGGGGGATCGGGGGGCGGCGGTGGTGGCGGTGCAACTGGGGTTGAGCCACCTGGCCACTCAGC
AGGGACGGCTGGATCTACTCCCTTCGGGCCCTGATGGGGTGTATGGTCAAGAGCTGGCCCAGGCAATGGCGGAATTGGTG
CTGGCTGCACCTGAGCGCAGTGAGATGGGATCCCCCCTTCCAGCCACCCCTACCCCCCTGGTGGCCGGAACGGCGACAGC
CCGCCAAGGGGTGGACATCATCGATGCTCAACTGCTGCGGCGTCTGCTGGAGCGCGTTAACTTGGCCTCTCCCTCGGTAC
TGGTGGATACGCGCTTGGAACGGCCTGCCCTGTCCCTGGAGCGCAAGCCAACCCGGAAACTGCTGCCCAGGGTTGCCTTC
GGGCAGGACTAA

Upstream 100 bases:

>100_bases
GCCATACTCCTCACCCACTTCACGACAGAGCTTTCCCCATCCCCCTCGACGTTCGCCGGCAAAGTCTCGCCTTAGGTCGT
TCCACTTTTTCAGCTTGCTG

Downstream 100 bases:

>100_bases
GTCTTGTCTTCGCCTTCCAACCTAGGCCTTGGCGGGAAGCCTAGAAGACCCCCCTCCAACAGAGGCTATCTCTGAGAAAG
ACGGGCCTGCCGGCAACGAA

Product: polysaccharide deacetylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 723; Mature: 723

Protein sequence:

>723_residues
MILLGFGTGALVAWATAHPDWVSRLPGLSPPLAEIPAPRAHAKAAQQRLPISLETQLERDPFALDPLASLSYVPAIMYHD
VVAGRKQVWFDTTAAELRQHFEAIKQAGLTPIHIDQLYKHLRDGDPLPEKAILLTFDDAYLGLYENAYPLLKEYNYPATY
FVQTGFVGVPTSKDHFTWDQMREMDASGLIDFAAHTVNHPPDLRVLDDARLRREVFDCKAKLEQELGHPIHYFAYPEGNR
DERVKQYLADAGYRMSFTMDPGFTGQSPNLLEVRRFNQFRITEAIIGARTFSLNRSPDYRLDVTQPLALTDEVINQVRVL
TLRGGRAATVHAERRYEVSTLAQRYQADAGINGSFFSIPWINSASNVMVGPAMAANHKTFIPGRPEDDQAIRGRPLVLLG
RDRLRFVPFDPDTMTHLENIRQLMPDVTDLFVAGLWLVKDGHALSPAEINSFRLASAAEFRPRAFFGVDDQERVVIGVTK
THVNAAILASLLPKTGIREAVLLDSGFSTSLVYQGEILATGHAGPNQPSRPVPHAILLYDLTRLWREDPHPEAKAGSEGD
QLEGLVQLLPASDQDAAKAQLESVLASQRTLRRGDRGAAVVAVQLGLSHLATQQGRLDLLPSGPDGVYGQELAQAMAELV
LAAPERSEMGSPLPATPTPLVAGTATARQGVDIIDAQLLRRLLERVNLASPSVLVDTRLERPALSLERKPTRKLLPRVAF
GQD

Sequences:

>Translated_723_residues
MILLGFGTGALVAWATAHPDWVSRLPGLSPPLAEIPAPRAHAKAAQQRLPISLETQLERDPFALDPLASLSYVPAIMYHD
VVAGRKQVWFDTTAAELRQHFEAIKQAGLTPIHIDQLYKHLRDGDPLPEKAILLTFDDAYLGLYENAYPLLKEYNYPATY
FVQTGFVGVPTSKDHFTWDQMREMDASGLIDFAAHTVNHPPDLRVLDDARLRREVFDCKAKLEQELGHPIHYFAYPEGNR
DERVKQYLADAGYRMSFTMDPGFTGQSPNLLEVRRFNQFRITEAIIGARTFSLNRSPDYRLDVTQPLALTDEVINQVRVL
TLRGGRAATVHAERRYEVSTLAQRYQADAGINGSFFSIPWINSASNVMVGPAMAANHKTFIPGRPEDDQAIRGRPLVLLG
RDRLRFVPFDPDTMTHLENIRQLMPDVTDLFVAGLWLVKDGHALSPAEINSFRLASAAEFRPRAFFGVDDQERVVIGVTK
THVNAAILASLLPKTGIREAVLLDSGFSTSLVYQGEILATGHAGPNQPSRPVPHAILLYDLTRLWREDPHPEAKAGSEGD
QLEGLVQLLPASDQDAAKAQLESVLASQRTLRRGDRGAAVVAVQLGLSHLATQQGRLDLLPSGPDGVYGQELAQAMAELV
LAAPERSEMGSPLPATPTPLVAGTATARQGVDIIDAQLLRRLLERVNLASPSVLVDTRLERPALSLERKPTRKLLPRVAF
GQD
>Mature_723_residues
MILLGFGTGALVAWATAHPDWVSRLPGLSPPLAEIPAPRAHAKAAQQRLPISLETQLERDPFALDPLASLSYVPAIMYHD
VVAGRKQVWFDTTAAELRQHFEAIKQAGLTPIHIDQLYKHLRDGDPLPEKAILLTFDDAYLGLYENAYPLLKEYNYPATY
FVQTGFVGVPTSKDHFTWDQMREMDASGLIDFAAHTVNHPPDLRVLDDARLRREVFDCKAKLEQELGHPIHYFAYPEGNR
DERVKQYLADAGYRMSFTMDPGFTGQSPNLLEVRRFNQFRITEAIIGARTFSLNRSPDYRLDVTQPLALTDEVINQVRVL
TLRGGRAATVHAERRYEVSTLAQRYQADAGINGSFFSIPWINSASNVMVGPAMAANHKTFIPGRPEDDQAIRGRPLVLLG
RDRLRFVPFDPDTMTHLENIRQLMPDVTDLFVAGLWLVKDGHALSPAEINSFRLASAAEFRPRAFFGVDDQERVVIGVTK
THVNAAILASLLPKTGIREAVLLDSGFSTSLVYQGEILATGHAGPNQPSRPVPHAILLYDLTRLWREDPHPEAKAGSEGD
QLEGLVQLLPASDQDAAKAQLESVLASQRTLRRGDRGAAVVAVQLGLSHLATQQGRLDLLPSGPDGVYGQELAQAMAELV
LAAPERSEMGSPLPATPTPLVAGTATARQGVDIIDAQLLRRLLERVNLASPSVLVDTRLERPALSLERKPTRKLLPRVAF
GQD

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1787260, Length=232, Percent_Identity=27.1551724137931, Blast_Score=89, Evalue=9e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 79845; Mature: 79845

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILLGFGTGALVAWATAHPDWVSRLPGLSPPLAEIPAPRAHAKAAQQRLPISLETQLERD
CEEEEECCCCEEEEECCCCHHHHHCCCCCCCHHHCCCCHHHHHHHHHHCCEEEECCCCCC
PFALDPLASLSYVPAIMYHDVVAGRKQVWFDTTAAELRQHFEAIKQAGLTPIHIDQLYKH
CCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEHHHHHHH
LRDGDPLPEKAILLTFDDAYLGLYENAYPLLKEYNYPATYFVQTGFVGVPTSKDHFTWDQ
HHCCCCCCCCEEEEEECCHHHHHHHCCCHHHHHCCCCEEEEEECCEEECCCCCCCCCHHH
MREMDASGLIDFAAHTVNHPPDLRVLDDARLRREVFDCKAKLEQELGHPIHYFAYPEGNR
HHHCCCCCHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
DERVKQYLADAGYRMSFTMDPGFTGQSPNLLEVRRFNQFRITEAIIGARTFSLNRSPDYR
HHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHEEEECCCCCCCE
LDVTQPLALTDEVINQVRVLTLRGGRAATVHAERRYEVSTLAQRYQADAGINGSFFSIPW
EECCCCHHHHHHHHCCEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEECCC
INSASNVMVGPAMAANHKTFIPGRPEDDQAIRGRPLVLLGRDRLRFVPFDPDTMTHLENI
CCCCCCEEECCCEECCCCEECCCCCCCCCCCCCCCEEEECCCCEEEECCCCHHHHHHHHH
RQLMPDVTDLFVAGLWLVKDGHALSPAEINSFRLASAAEFRPRAFFGVDDQERVVIGVTK
HHHCCHHHHHHHHHHHEEECCCCCCCCCCCCEEECCHHCCCCCEEECCCCCCEEEEEEEH
THVNAAILASLLPKTGIREAVLLDSGFSTSLVYQGEILATGHAGPNQPSRPVPHAILLYD
HHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEECEEEEECCCCCCCCCCCCCHHHHHHH
LTRLWREDPHPEAKAGSEGDQLEGLVQLLPASDQDAAKAQLESVLASQRTLRRGDRGAAV
HHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
VAVQLGLSHLATQQGRLDLLPSGPDGVYGQELAQAMAELVLAAPERSEMGSPLPATPTPL
EEEEHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCC
VAGTATARQGVDIIDAQLLRRLLERVNLASPSVLVDTRLERPALSLERKPTRKLLPRVAF
EECCCHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCC
GQD
CCC
>Mature Secondary Structure
MILLGFGTGALVAWATAHPDWVSRLPGLSPPLAEIPAPRAHAKAAQQRLPISLETQLERD
CEEEEECCCCEEEEECCCCHHHHHCCCCCCCHHHCCCCHHHHHHHHHHCCEEEECCCCCC
PFALDPLASLSYVPAIMYHDVVAGRKQVWFDTTAAELRQHFEAIKQAGLTPIHIDQLYKH
CCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEHHHHHHH
LRDGDPLPEKAILLTFDDAYLGLYENAYPLLKEYNYPATYFVQTGFVGVPTSKDHFTWDQ
HHCCCCCCCCEEEEEECCHHHHHHHCCCHHHHHCCCCEEEEEECCEEECCCCCCCCCHHH
MREMDASGLIDFAAHTVNHPPDLRVLDDARLRREVFDCKAKLEQELGHPIHYFAYPEGNR
HHHCCCCCHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
DERVKQYLADAGYRMSFTMDPGFTGQSPNLLEVRRFNQFRITEAIIGARTFSLNRSPDYR
HHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHEEEECCCCCCCE
LDVTQPLALTDEVINQVRVLTLRGGRAATVHAERRYEVSTLAQRYQADAGINGSFFSIPW
EECCCCHHHHHHHHCCEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEECCC
INSASNVMVGPAMAANHKTFIPGRPEDDQAIRGRPLVLLGRDRLRFVPFDPDTMTHLENI
CCCCCCEEECCCEECCCCEECCCCCCCCCCCCCCCEEEECCCCEEEECCCCHHHHHHHHH
RQLMPDVTDLFVAGLWLVKDGHALSPAEINSFRLASAAEFRPRAFFGVDDQERVVIGVTK
HHHCCHHHHHHHHHHHEEECCCCCCCCCCCCEEECCHHCCCCCEEECCCCCCEEEEEEEH
THVNAAILASLLPKTGIREAVLLDSGFSTSLVYQGEILATGHAGPNQPSRPVPHAILLYD
HHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEECEEEEECCCCCCCCCCCCCHHHHHHH
LTRLWREDPHPEAKAGSEGDQLEGLVQLLPASDQDAAKAQLESVLASQRTLRRGDRGAAV
HHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
VAVQLGLSHLATQQGRLDLLPSGPDGVYGQELAQAMAELVLAAPERSEMGSPLPATPTPL
EEEEHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCC
VAGTATARQGVDIIDAQLLRRLLERVNLASPSVLVDTRLERPALSLERKPTRKLLPRVAF
EECCCHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCC
GQD
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]