| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607657
Identifier: 86607657
GI number: 86607657
Start: 169411
End: 171030
Strand: Reverse
Name: 86607657
Synonym: CYB_0155
Alternate gene names: NA
Gene position: 171030-169411 (Counterclockwise)
Preceding gene: 86607658
Following gene: 86607656
Centisome position: 5.61
GC content: 61.67
Gene sequence:
>1620_bases ATGGGCTTTTTTGTCGGCCAAATCGTGGGTCGGTTGGGGATGCCCCCCCTGCTGGGGATGATCCTCGTGGGGATCTTGCT GGGAGATGTCCTATCCCCGGAGGTGCTGGCAGCGGCGGGGGATCTGCGGGTGGTGGCGGTGATGATCATTTTGATGAAGG CGGGCCTGGGGCTGGATCGGGAGAAGCTGGCCCAGCAGGGATCCGTGGCGTTGCGGCTGGGGTTTTTGCCGGCAGCCTGC GAGGCGGTGGCGGTGGCCCTGTTGAGCACCTGGATCCTGGGGTTGGACTGGCCTACCGGTTTGCTGCTGGGCTGTGTGAT CGGGGCAGAGTCGCCGGCTGTGATCGTGCCGGGGATGTTGCGCCTCAAGAGTTTGGGCTGGGGAGTAACCAAAGGGATCC CGGATGCCATTTTGACCGGCAGCGCCCTTTCCGACGTACTGCTGTTGTTGGGGTTTAGCCTGCTGCTCAGCTTTTTGGGC CAAGGATCCGCCGCGAGCGTTCGCTTGGGAAGCCTGGAGCTGTCGCCGCTGCAGTGGCTGCCGTTCCAGGTGGTGATGGA GATCCTGCTGGGCGTGGCTGTAGGCTACCTGGGGGCGCGGGTTCTGGTGTCGCTGCTAACCCAACAAAACTGGACTCGCA ACAGCGTGCAGGAAGTGCTGCTGGCTGCCTGCATGGCCTTGGGCTTGGTGCTGGCGCCGCAGGTGTGGCCCTATTTTTCC GGCTATCTGGCGGTGATGGCCATGGGGTTTTTTCTGATTGAGCTGGATGCCCCTTTGGCGCGGCGGCTGCGGGGTGGGTT CGATGCCCTCTGGACGGTGGCGGAGATCGTGTTGTTTGTGCTACTGGGAGCGTCGCTGGATCTGGGGGTGCTAGGATCCG TGTTTTGGCCGGGCTTGCTGCTCTTAACCCTGAGCCTGCTGCTAGGGCGGGGCCTGGGTTGGTGGCTTTCCACTCTGGGA AGCAATTGGAACGGGCGGGAGCGGCTGTTTTTGCTACCGGGCAACATGGCCAAGGCGACGGTGCAGGCGGCTATTGGTGG GATCCCTTTGGCCCAAGGGATCCCCGGTGGGGAGATCATTTTGGCCTTGGCGGCTTTGTCAATTCTGGTTACCGCTCCCC TGGGCGCTTGGCTGACCCAGGTTTGCGCCCCCCGGCTTTTGGAAAAAGGAGAGGTGGATCCCACCAAGGTAGGCAGCCAG GGCAAGGTGAGCTTTTTGGCAGCGGTGGACACCTCCCCTTTGGCCGAAGCCGTGCTGCGCAAGGTGGCCGATTTGGCGCG GCGGGTGGATGGGGAAGTGATTGTGTTGCATGTTACCGATAAGCCGCAGGGGAAAGGGGTAGAACTGTTGCGGCAACTCA CCCAGCGTCTTTTGGCGGATATTCGCCACCAGTTTTGCTTGGCCTCGGGGCCCTTGGCAGAGACCATCGTAACCCTAGCT CAGGAGCGGCAGGTAACCGACATCGTCATGGGCAAGCGGGGGCACCGCGGCTGGGAGCAGGTTTTGGTGGGATCCACTTC CCAAGCGGTGTTGGAAACCAGCCCGATTCCGGTAATTTTGGTAGAGGAAGAGGACTTCAAGAGAAGCAGGATCCCTATCT CTGAGGGCAGAAAAAGCTAA
Upstream 100 bases:
>100_bases TGACGCGGATGGCTTTTTCTCCCTGGGCTGCCCTTCAACACCCTGACGACAAGGAGATGAGGATCTGGTGATGCTGGGCA GTTGGCTGTGGATCTTGGTG
Downstream 100 bases:
>100_bases GGATCCCACCTTTTCCGTAGGAAGTTCTGGGAACACAGTTCAAGGAGAATAGATGCGCTTGCAATCGGTGTGGGCTTACC TAAACCATGGCTTGGTCTCT
Product: sodium/hydrogen exchanger/universal stress family protein
Products: NA
Alternate protein names: Na(+)/H(+) Antiporter; Transporter CPA2 Family; Na+/H+ Antiporter; Sodium/Proton Antiporter CPA1 Family; Na+/H+-Exchanging Protein; Sodium/Hydrogen Antiporter; Sodium/Hydrogen Exchanger Family Protein; Na+/H+-Exchanging ProteinNa+/H+ Antiporter; Monovalent CationProton Antiporter-2 Family Protein; Transporter Monovalent CationProton Antiporter-2 Family; Sodium/Hydrogen Exchanger/Universal Stress Family Protein
Number of amino acids: Translated: 539; Mature: 538
Protein sequence:
>539_residues MGFFVGQIVGRLGMPPLLGMILVGILLGDVLSPEVLAAAGDLRVVAVMIILMKAGLGLDREKLAQQGSVALRLGFLPAAC EAVAVALLSTWILGLDWPTGLLLGCVIGAESPAVIVPGMLRLKSLGWGVTKGIPDAILTGSALSDVLLLLGFSLLLSFLG QGSAASVRLGSLELSPLQWLPFQVVMEILLGVAVGYLGARVLVSLLTQQNWTRNSVQEVLLAACMALGLVLAPQVWPYFS GYLAVMAMGFFLIELDAPLARRLRGGFDALWTVAEIVLFVLLGASLDLGVLGSVFWPGLLLLTLSLLLGRGLGWWLSTLG SNWNGRERLFLLPGNMAKATVQAAIGGIPLAQGIPGGEIILALAALSILVTAPLGAWLTQVCAPRLLEKGEVDPTKVGSQ GKVSFLAAVDTSPLAEAVLRKVADLARRVDGEVIVLHVTDKPQGKGVELLRQLTQRLLADIRHQFCLASGPLAETIVTLA QERQVTDIVMGKRGHRGWEQVLVGSTSQAVLETSPIPVILVEEEDFKRSRIPISEGRKS
Sequences:
>Translated_539_residues MGFFVGQIVGRLGMPPLLGMILVGILLGDVLSPEVLAAAGDLRVVAVMIILMKAGLGLDREKLAQQGSVALRLGFLPAAC EAVAVALLSTWILGLDWPTGLLLGCVIGAESPAVIVPGMLRLKSLGWGVTKGIPDAILTGSALSDVLLLLGFSLLLSFLG QGSAASVRLGSLELSPLQWLPFQVVMEILLGVAVGYLGARVLVSLLTQQNWTRNSVQEVLLAACMALGLVLAPQVWPYFS GYLAVMAMGFFLIELDAPLARRLRGGFDALWTVAEIVLFVLLGASLDLGVLGSVFWPGLLLLTLSLLLGRGLGWWLSTLG SNWNGRERLFLLPGNMAKATVQAAIGGIPLAQGIPGGEIILALAALSILVTAPLGAWLTQVCAPRLLEKGEVDPTKVGSQ GKVSFLAAVDTSPLAEAVLRKVADLARRVDGEVIVLHVTDKPQGKGVELLRQLTQRLLADIRHQFCLASGPLAETIVTLA QERQVTDIVMGKRGHRGWEQVLVGSTSQAVLETSPIPVILVEEEDFKRSRIPISEGRKS >Mature_538_residues GFFVGQIVGRLGMPPLLGMILVGILLGDVLSPEVLAAAGDLRVVAVMIILMKAGLGLDREKLAQQGSVALRLGFLPAACE AVAVALLSTWILGLDWPTGLLLGCVIGAESPAVIVPGMLRLKSLGWGVTKGIPDAILTGSALSDVLLLLGFSLLLSFLGQ GSAASVRLGSLELSPLQWLPFQVVMEILLGVAVGYLGARVLVSLLTQQNWTRNSVQEVLLAACMALGLVLAPQVWPYFSG YLAVMAMGFFLIELDAPLARRLRGGFDALWTVAEIVLFVLLGASLDLGVLGSVFWPGLLLLTLSLLLGRGLGWWLSTLGS NWNGRERLFLLPGNMAKATVQAAIGGIPLAQGIPGGEIILALAALSILVTAPLGAWLTQVCAPRLLEKGEVDPTKVGSQG KVSFLAAVDTSPLAEAVLRKVADLARRVDGEVIVLHVTDKPQGKGVELLRQLTQRLLADIRHQFCLASGPLAETIVTLAQ ERQVTDIVMGKRGHRGWEQVLVGSTSQAVLETSPIPVILVEEEDFKRSRIPISEGRKS
Specific function: Unknown
COG id: COG0025
COG function: function code P; NhaP-type Na+/H+ and K+/H+ antiporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI47271479, Length=380, Percent_Identity=33.6842105263158, Blast_Score=139, Evalue=7e-33, Organism=Homo sapiens, GI66793392, Length=369, Percent_Identity=30.3523035230352, Blast_Score=135, Evalue=7e-32, Organism=Homo sapiens, GI154937338, Length=309, Percent_Identity=30.0970873786408, Blast_Score=109, Evalue=6e-24, Organism=Caenorhabditis elegans, GI25152227, Length=408, Percent_Identity=24.0196078431373, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17567635, Length=415, Percent_Identity=23.6144578313253, Blast_Score=79, Evalue=7e-15, Organism=Drosophila melanogaster, GI20129297, Length=407, Percent_Identity=29.7297297297297, Blast_Score=119, Evalue=4e-27, Organism=Drosophila melanogaster, GI45550940, Length=407, Percent_Identity=29.7297297297297, Blast_Score=119, Evalue=5e-27, Organism=Drosophila melanogaster, GI24649169, Length=416, Percent_Identity=28.6057692307692, Blast_Score=101, Evalue=1e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57087; Mature: 56956
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFFVGQIVGRLGMPPLLGMILVGILLGDVLSPEVLAAAGDLRVVAVMIILMKAGLGLDR CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHCCCCCH EKLAQQGSVALRLGFLPAACEAVAVALLSTWILGLDWPTGLLLGCVIGAESPAVIVPGML HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEECCHHH RLKSLGWGVTKGIPDAILTGSALSDVLLLLGFSLLLSFLGQGSAASVRLGSLELSPLQWL HHHHCCCCHHCCCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEECCCHHCC PFQVVMEILLGVAVGYLGARVLVSLLTQQNWTRNSVQEVLLAACMALGLVLAPQVWPYFS CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH GYLAVMAMGFFLIELDAPLARRLRGGFDALWTVAEIVLFVLLGASLDLGVLGSVFWPGLL HHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH LLTLSLLLGRGLGWWLSTLGSNWNGRERLFLLPGNMAKATVQAAIGGIPLAQGIPGGEII HHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHCCCCHHCCCCCHHHH LALAALSILVTAPLGAWLTQVCAPRLLEKGEVDPTKVGSQGKVSFLAAVDTSPLAEAVLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEECCCCHHHHHHHH KVADLARRVDGEVIVLHVTDKPQGKGVELLRQLTQRLLADIRHQFCLASGPLAETIVTLA HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH QERQVTDIVMGKRGHRGWEQVLVGSTSQAVLETSPIPVILVEEEDFKRSRIPISEGRKS HHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHCCCCCCEEEECCCCCHHHCCCHHCCCCC >Mature Secondary Structure GFFVGQIVGRLGMPPLLGMILVGILLGDVLSPEVLAAAGDLRVVAVMIILMKAGLGLDR CCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHCCCCCH EKLAQQGSVALRLGFLPAACEAVAVALLSTWILGLDWPTGLLLGCVIGAESPAVIVPGML HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEECCHHH RLKSLGWGVTKGIPDAILTGSALSDVLLLLGFSLLLSFLGQGSAASVRLGSLELSPLQWL HHHHCCCCHHCCCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEECCCHHCC PFQVVMEILLGVAVGYLGARVLVSLLTQQNWTRNSVQEVLLAACMALGLVLAPQVWPYFS CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH GYLAVMAMGFFLIELDAPLARRLRGGFDALWTVAEIVLFVLLGASLDLGVLGSVFWPGLL HHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH LLTLSLLLGRGLGWWLSTLGSNWNGRERLFLLPGNMAKATVQAAIGGIPLAQGIPGGEII HHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHCCCCHHCCCCCHHHH LALAALSILVTAPLGAWLTQVCAPRLLEKGEVDPTKVGSQGKVSFLAAVDTSPLAEAVLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEECCCCHHHHHHHH KVADLARRVDGEVIVLHVTDKPQGKGVELLRQLTQRLLADIRHQFCLASGPLAETIVTLA HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH QERQVTDIVMGKRGHRGWEQVLVGSTSQAVLETSPIPVILVEEEDFKRSRIPISEGRKS HHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHCCCCCCEEEECCCCCHHHCCCHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA