| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is 86607604
Identifier: 86607604
GI number: 86607604
Start: 118335
End: 119306
Strand: Reverse
Name: 86607604
Synonym: CYB_0102
Alternate gene names: NA
Gene position: 119306-118335 (Counterclockwise)
Preceding gene: 86607607
Following gene: 86607603
Centisome position: 3.92
GC content: 56.17
Gene sequence:
>972_bases ATGACTGTTGCTGCTACTGCTGAACCAGCCCAAAAACCTTTCGCATTGCCTCGTGAGCTGTTGGGGCCACCCTCGGAATT TTGGAATCCCACCTTGCTGATGTTTTTGGCTGCGGTGGTGCTTTCGGCCTCTTGCTTTGGCGGGTACGCCTTTTGGCACT GGCCCAAATGGATGGTGTTCTGGCTCAATTTTGTGGCCCTCTATGTTCTGGGCACGGTGATTCACGATGCTTCCCATGGC TCGGCCCACCGCAACCGCTTTCTGAACGAGGCACTCGGACACGGCTCTGCCCTGTTGCAGGGTTTTGTCTATCCCGTCTT TAAGCGGGTACACATGCAGCACCACGCCCACGTCAACCATCCTGAAGACGATCCCGATCACTATGTCTCAACGGGAGGGC CGCTGTGGCTGATCGCGCCGCGGTTTTTCTACCATGAGGTGTTTTTCTTTAAGCGGCAGCTCTGGCGGAAAGGTCGCTGG GATCTGCTGGAGTGGGGCTTGAGTCGGCTGGTGGTTATCCTGACCTTTGGTCTGGCCAGCTACTTCGGCTACACCGACTA CATCATGAACTATTGGCTACCCCCTGCCTTTATCATGGGGTTCTTGCTGGGCTTGTTTTTTGACTACCTGCCCCATCGCC CTTTTCAATCCCAAGAGCGGTGGTACAATGCCCGCGTCTATCCCGGATGGCTGACCAACATTCTGCTGTTGGGGCAAAAC TATCACCTGATCCACCATCTCTGGCCTTCTGTTCCCTGGTACAAATACCAAGCAGCCTACTGGGCAGCCAAACCTGAGCT GGACGCGCGCAACTGCCAGCAAACGCTGGGGATCTGGGAGAAGGGAGAGTTTTGGGGCTTTTTGTACGATGCTCTGATCG GTCTGCACTGGCACAAGCCCACTTCAGCTCACCCCGCTGCGCCAGCCAATCCAGAATCGGAGGGATCCCCTGCGGATCCA CAGCTTGGCTAG
Upstream 100 bases:
>100_bases CAAACTTATCTCTTCGATCTCTTTTCGGTGTGATGACTGGGACGCGCTGCCTCGACCCATCCTCTCTGTCTGCACTGTGC GCACCTAAGGATGGCTGCCG
Downstream 100 bases:
>100_bases CATGGTTTGGCCAACGCTGCAAGTCCCGCAGGTGCTGCTGTTTGTGGAGGCGGCCAGCCTGTTGCAGGACTCTAGCCAGG TTTTGTTGCAGGCCGGTCGG
Product: beta-carotene ketolase
Products: NA
Alternate protein names: Fatty Acid Desaturase; Fatty Acid Desaturase Domain Protein; Electron Transfer Protein FdxB; Beta-Carotene Oxygenase CrtR; Phenylacetic Acid Degradation Oxidoreductase; Fatty Acid Desaturase Subfamily; Beta Carotene Hydroxylase; Phthalate 4 5-Dioxygenase; B-Carotene Hydroxylase; Delta(12)-Fatty Acid Dehydrogenase
Number of amino acids: Translated: 323; Mature: 322
Protein sequence:
>323_residues MTVAATAEPAQKPFALPRELLGPPSEFWNPTLLMFLAAVVLSASCFGGYAFWHWPKWMVFWLNFVALYVLGTVIHDASHG SAHRNRFLNEALGHGSALLQGFVYPVFKRVHMQHHAHVNHPEDDPDHYVSTGGPLWLIAPRFFYHEVFFFKRQLWRKGRW DLLEWGLSRLVVILTFGLASYFGYTDYIMNYWLPPAFIMGFLLGLFFDYLPHRPFQSQERWYNARVYPGWLTNILLLGQN YHLIHHLWPSVPWYKYQAAYWAAKPELDARNCQQTLGIWEKGEFWGFLYDALIGLHWHKPTSAHPAAPANPESEGSPADP QLG
Sequences:
>Translated_323_residues MTVAATAEPAQKPFALPRELLGPPSEFWNPTLLMFLAAVVLSASCFGGYAFWHWPKWMVFWLNFVALYVLGTVIHDASHG SAHRNRFLNEALGHGSALLQGFVYPVFKRVHMQHHAHVNHPEDDPDHYVSTGGPLWLIAPRFFYHEVFFFKRQLWRKGRW DLLEWGLSRLVVILTFGLASYFGYTDYIMNYWLPPAFIMGFLLGLFFDYLPHRPFQSQERWYNARVYPGWLTNILLLGQN YHLIHHLWPSVPWYKYQAAYWAAKPELDARNCQQTLGIWEKGEFWGFLYDALIGLHWHKPTSAHPAAPANPESEGSPADP QLG >Mature_322_residues TVAATAEPAQKPFALPRELLGPPSEFWNPTLLMFLAAVVLSASCFGGYAFWHWPKWMVFWLNFVALYVLGTVIHDASHGS AHRNRFLNEALGHGSALLQGFVYPVFKRVHMQHHAHVNHPEDDPDHYVSTGGPLWLIAPRFFYHEVFFFKRQLWRKGRWD LLEWGLSRLVVILTFGLASYFGYTDYIMNYWLPPAFIMGFLLGLFFDYLPHRPFQSQERWYNARVYPGWLTNILLLGQNY HLIHHLWPSVPWYKYQAAYWAAKPELDARNCQQTLGIWEKGEFWGFLYDALIGLHWHKPTSAHPAAPANPESEGSPADPQ LG
Specific function: Unknown
COG id: COG3239
COG function: function code I; Fatty acid desaturase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.14.13.-
Molecular weight: Translated: 37440; Mature: 37309
Theoretical pI: Translated: 7.61; Mature: 7.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVAATAEPAQKPFALPRELLGPPSEFWNPTLLMFLAAVVLSASCFGGYAFWHWPKWMVF CCCCCCCCCCCCCCCCCHHHCCCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH WLNFVALYVLGTVIHDASHGSAHRNRFLNEALGHGSALLQGFVYPVFKRVHMQHHAHVNH HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC PEDDPDHYVSTGGPLWLIAPRFFYHEVFFFKRQLWRKGRWDLLEWGLSRLVVILTFGLAS CCCCCCCEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH YFGYTDYIMNYWLPPAFIMGFLLGLFFDYLPHRPFQSQERWYNARVYPGWLTNILLLGQN HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHCCC YHLIHHLWPSVPWYKYQAAYWAAKPELDARNCQQTLGIWEKGEFWGFLYDALIGLHWHKP CHHHHHHCCCCCCEEHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC TSAHPAAPANPESEGSPADPQLG CCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TVAATAEPAQKPFALPRELLGPPSEFWNPTLLMFLAAVVLSASCFGGYAFWHWPKWMVF CCCCCCCCCCCCCCCCHHHCCCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH WLNFVALYVLGTVIHDASHGSAHRNRFLNEALGHGSALLQGFVYPVFKRVHMQHHAHVNH HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC PEDDPDHYVSTGGPLWLIAPRFFYHEVFFFKRQLWRKGRWDLLEWGLSRLVVILTFGLAS CCCCCCCEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH YFGYTDYIMNYWLPPAFIMGFLLGLFFDYLPHRPFQSQERWYNARVYPGWLTNILLLGQN HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHCCC YHLIHHLWPSVPWYKYQAAYWAAKPELDARNCQQTLGIWEKGEFWGFLYDALIGLHWHKP CHHHHHHCCCCCCEEHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC TSAHPAAPANPESEGSPADPQLG CCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA