| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is yueF [H]
Identifier: 86607588
GI number: 86607588
Start: 101494
End: 102624
Strand: Reverse
Name: yueF [H]
Synonym: CYB_0086
Alternate gene names: 86607588
Gene position: 102624-101494 (Counterclockwise)
Preceding gene: 86607593
Following gene: 86607586
Centisome position: 3.37
GC content: 58.89
Gene sequence:
>1131_bases GTGACCTTCGCCCAGTGGCTGGGGCTAGGGGCGCTGTTGGGCCTGCTAGTTCTGCTTTGGCAGATCCGGCAGATCCTGCT GTTGGTGTTCGCGGCCATTGTGTTGGCAGTAGCATTGGATACCTTGGCCCAGATCCCACAGCGCTACGGCTTTCGGCGTG GCCCCTCAATTGTCATCACCAGTTTGACGGTTTTGGTGGCCGCGATCTTGGTGGGGCTAATCGTGGTGCCCCCCCTGGCG GAGCAGTTGCGGTGGCTGTTTACCGATGGGGTGCCCGCCGGGATCGTGCAAGCGCAGCGGCTGTTCGAGAGCTTGATTCT CTCTTTGCCGACGGATATTGAGCTGCCGACGCTGCGGGAATTGGCCAATAGCTTGGTGCCCCAGGCCACCGAGTTGGTGC GACAGGTGCGCGACTTTTTCTCCGAGTCCTTCACTGCCTTTTTTGGCACCCTGCTCAACCTATTGTTTGTAATCATCCTC ACCATTTTGTTGTTGGCGGATCCCCAAGCCTACAGTCGCGCTTTTGTCTCGGTTTTCCCGGCCTTTTACCGTCCCCGCAT TCGCTACATCCTCAAGCGCTGTGAGCTGGCGCTGCGAGGGTGGCTGATGGGGATCCTCTTCACCAGCACCTTGGTGATGC TGCTGAGTGGGATCGGGCTGTGGATTTTGGGGGTGCCCCTGATCTTGGCCAATGCGGTGCTGGCGGGATTGTTCAACTTC ATCCCCAATATCGGCCCCACCTTAAGCGTGGTAGCCCCCATGCTGGTAGCCCTCACGGATGCCCCTTGGAAGTCCTTGGC AGTGCTGGGGCTGTATATCCTGATCCAGCAGTTGGAAAGCAGCGTCTTCACCCCCATCGTTATGTCCCGACAGGTGTCGC TCCTGCCCGCCCTAACCCTAGTAGCTCAAGTTACTTCAGCCTTTTTCTTTGGGGTGCTGGGCCTGTTCCTGGCCGTGCCT TTGGCGGCAATCCTGCAGGTGTGGATTCAGGAGGTGCTAATTCGGGATGTCCTGGATCCCTGGCAGGGATCCCGATTGCG GCCCTTGCTCAGGTTGGAAAGTGGAGAGAATGGGATCCAGAGCTCCACCCAGGATCCCATCCCGCCGCCGCAATCGGTGC GAGATGGTTAA
Upstream 100 bases:
>100_bases GACAGGATCGCGCATCCAGGGTTCTCGAATAGCGATGGGACTTGTCGGGATCCCATCTAGAATAGGCGACAACCGGGCGA GAGAGGAGGTGAGCTGGCGG
Downstream 100 bases:
>100_bases GGGAGCAATGCTCCTGACTTGGCTCAGCCACACCAGCCTAGCTACGCGACCAAGAGAGCAGAAAGCGGTTCTTGCCCTGA AGGACTTGACCGGTATAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 376; Mature: 375
Protein sequence:
>376_residues MTFAQWLGLGALLGLLVLLWQIRQILLLVFAAIVLAVALDTLAQIPQRYGFRRGPSIVITSLTVLVAAILVGLIVVPPLA EQLRWLFTDGVPAGIVQAQRLFESLILSLPTDIELPTLRELANSLVPQATELVRQVRDFFSESFTAFFGTLLNLLFVIIL TILLLADPQAYSRAFVSVFPAFYRPRIRYILKRCELALRGWLMGILFTSTLVMLLSGIGLWILGVPLILANAVLAGLFNF IPNIGPTLSVVAPMLVALTDAPWKSLAVLGLYILIQQLESSVFTPIVMSRQVSLLPALTLVAQVTSAFFFGVLGLFLAVP LAAILQVWIQEVLIRDVLDPWQGSRLRPLLRLESGENGIQSSTQDPIPPPQSVRDG
Sequences:
>Translated_376_residues MTFAQWLGLGALLGLLVLLWQIRQILLLVFAAIVLAVALDTLAQIPQRYGFRRGPSIVITSLTVLVAAILVGLIVVPPLA EQLRWLFTDGVPAGIVQAQRLFESLILSLPTDIELPTLRELANSLVPQATELVRQVRDFFSESFTAFFGTLLNLLFVIIL TILLLADPQAYSRAFVSVFPAFYRPRIRYILKRCELALRGWLMGILFTSTLVMLLSGIGLWILGVPLILANAVLAGLFNF IPNIGPTLSVVAPMLVALTDAPWKSLAVLGLYILIQQLESSVFTPIVMSRQVSLLPALTLVAQVTSAFFFGVLGLFLAVP LAAILQVWIQEVLIRDVLDPWQGSRLRPLLRLESGENGIQSSTQDPIPPPQSVRDG >Mature_375_residues TFAQWLGLGALLGLLVLLWQIRQILLLVFAAIVLAVALDTLAQIPQRYGFRRGPSIVITSLTVLVAAILVGLIVVPPLAE QLRWLFTDGVPAGIVQAQRLFESLILSLPTDIELPTLRELANSLVPQATELVRQVRDFFSESFTAFFGTLLNLLFVIILT ILLLADPQAYSRAFVSVFPAFYRPRIRYILKRCELALRGWLMGILFTSTLVMLLSGIGLWILGVPLILANAVLAGLFNFI PNIGPTLSVVAPMLVALTDAPWKSLAVLGLYILIQQLESSVFTPIVMSRQVSLLPALTLVAQVTSAFFFGVLGLFLAVPL AAILQVWIQEVLIRDVLDPWQGSRLRPLLRLESGENGIQSSTQDPIPPPQSVRDG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0118 (perM) family [H]
Homologues:
Organism=Escherichia coli, GI87082271, Length=204, Percent_Identity=25, Blast_Score=62, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002549 [H]
Pfam domain/function: PF01594 UPF0118 [H]
EC number: NA
Molecular weight: Translated: 41264; Mature: 41133
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFAQWLGLGALLGLLVLLWQIRQILLLVFAAIVLAVALDTLAQIPQRYGFRRGPSIVIT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH SLTVLVAAILVGLIVVPPLAEQLRWLFTDGVPAGIVQAQRLFESLILSLPTDIELPTLRE HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH LANSLVPQATELVRQVRDFFSESFTAFFGTLLNLLFVIILTILLLADPQAYSRAFVSVFP HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH AFYRPRIRYILKRCELALRGWLMGILFTSTLVMLLSGIGLWILGVPLILANAVLAGLFNF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IPNIGPTLSVVAPMLVALTDAPWKSLAVLGLYILIQQLESSVFTPIVMSRQVSLLPALTL HCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAQVTSAFFFGVLGLFLAVPLAAILQVWIQEVLIRDVLDPWQGSRLRPLLRLESGENGIQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCC SSTQDPIPPPQSVRDG CCCCCCCCCCCCCCCC >Mature Secondary Structure TFAQWLGLGALLGLLVLLWQIRQILLLVFAAIVLAVALDTLAQIPQRYGFRRGPSIVIT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH SLTVLVAAILVGLIVVPPLAEQLRWLFTDGVPAGIVQAQRLFESLILSLPTDIELPTLRE HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH LANSLVPQATELVRQVRDFFSESFTAFFGTLLNLLFVIILTILLLADPQAYSRAFVSVFP HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH AFYRPRIRYILKRCELALRGWLMGILFTSTLVMLLSGIGLWILGVPLILANAVLAGLFNF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IPNIGPTLSVVAPMLVALTDAPWKSLAVLGLYILIQQLESSVFTPIVMSRQVSLLPALTL HCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAQVTSAFFFGVLGLFLAVPLAAILQVWIQEVLIRDVLDPWQGSRLRPLLRLESGENGIQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCC SSTQDPIPPPQSVRDG CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]