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The map label for this gene is ccsA

Identifier: 86607586

GI number: 86607586

Start: 98558

End: 99610

Strand: Reverse

Name: ccsA

Synonym: CYB_0084

Alternate gene names: 86607586

Gene position: 99610-98558 (Counterclockwise)

Preceding gene: 86607588

Following gene: 86607585

Centisome position: 3.27

GC content: 60.4

Gene sequence:

>1053_bases
ATGGCTCTGTTGGCGATAACAGCTCTTGCGGGCATGGATCTGGCCCAGTGGCAAGCTCTGCTCAACAACGTGGCGTTTGC
CATTTCTCTGGGGGCCATGCTGTTCTACTGGGGTGGGGCAGCTTTTCCCCAGATGCAGCTTTTGGCCGAATTGGGCCTAG
CGGGGATGATCGGGGCAAACTTGACGATGGCCGCCCTGTTGACGGCCCGCTGGATCGATGCAGGCTACTTCCCCTTGAGT
AATCTGTACGAGTCTTTGTTTTTCCTGGCCTGGGGGATCACCGCTTTGCACCTGCTGGCCCTCCACTGGAGCCGCAGCCG
CTGGGTGGGGGTCATGACTGCCCCAGTTGTAACCGGGATCGTAGCCTTTGCTGCCTTGGTGCTGCCGGAAGATATGCAGG
TAGCCCAGCCCCTCGTGCCGGCTTTGCAATCCAACTGGCTGATGATGCACGTGACTGTGATGTTGCTGGCCTACGCGGCG
CTGCTGGTGGGATCCCTTCTCTCCATCAGCTTTCTCATCGTCACTCGCGGTCAGGAAGTGCATCTCAAGGGCAACTCCCT
CGGCCTGCAATTTCGCCCTCCCCAACCCCAAACCCATCCCGAATGGGCGGAAGCCACCCTGCCTTCCCCGGCTTCAGAAC
TGGCCTACGCCGGCCTCCGCTCCCCCCGTCCTGCCCCCTCGTCGGCTGAACTCCCCCCCCAACCGGCCCCCGAAGGGATC
CCCTGGCAACGGCTGAGCCTGGCAGAAATCTTGGACAACACCAGCTACCGGCTGATCGGGCTGGGGTTCCCCCTGCTCAC
CATCGGCATTATTGCCGGCGCCGTTTGGGCCAACGAAGCCTGGGGTACCTACTGGAGCTGGGATCCGAAAGAAACCTGGG
CTTTAATTACCTGGTTGGTCTTTGCCGCCTATTTGCACGCCCGCATCACCAAAGGCTGGCAAGGCAGACGCCCCGCCCTC
TTGGCCAGCTTGGGTTTTGGAGTGGTTTGGGTATGTTACCTGGGGGTCAACTTTCTGGGCAAAGGCTTACACAGTTATGG
CTGGTTTTTCTGA

Upstream 100 bases:

>100_bases
TTACCAGCATGTGTCCTTTGGGGAAGATCCCTTCCCCCGCCCTAGAATGGGATCAACTGGCCTGGCTCAAGCCGGGTCGG
AGACACTTTTGAGGTCGTGT

Downstream 100 bases:

>100_bases
GGGAATTTTTCTCAAAAACCGGCCCGAGTTTATGGGTATTCTGGTGCTGGCAAGCCGTAGTGGATCCCTTCGAGGAGAAA
AACGATGCGACTGTTCAACT

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MALLAITALAGMDLAQWQALLNNVAFAISLGAMLFYWGGAAFPQMQLLAELGLAGMIGANLTMAALLTARWIDAGYFPLS
NLYESLFFLAWGITALHLLALHWSRSRWVGVMTAPVVTGIVAFAALVLPEDMQVAQPLVPALQSNWLMMHVTVMLLAYAA
LLVGSLLSISFLIVTRGQEVHLKGNSLGLQFRPPQPQTHPEWAEATLPSPASELAYAGLRSPRPAPSSAELPPQPAPEGI
PWQRLSLAEILDNTSYRLIGLGFPLLTIGIIAGAVWANEAWGTYWSWDPKETWALITWLVFAAYLHARITKGWQGRRPAL
LASLGFGVVWVCYLGVNFLGKGLHSYGWFF

Sequences:

>Translated_350_residues
MALLAITALAGMDLAQWQALLNNVAFAISLGAMLFYWGGAAFPQMQLLAELGLAGMIGANLTMAALLTARWIDAGYFPLS
NLYESLFFLAWGITALHLLALHWSRSRWVGVMTAPVVTGIVAFAALVLPEDMQVAQPLVPALQSNWLMMHVTVMLLAYAA
LLVGSLLSISFLIVTRGQEVHLKGNSLGLQFRPPQPQTHPEWAEATLPSPASELAYAGLRSPRPAPSSAELPPQPAPEGI
PWQRLSLAEILDNTSYRLIGLGFPLLTIGIIAGAVWANEAWGTYWSWDPKETWALITWLVFAAYLHARITKGWQGRRPAL
LASLGFGVVWVCYLGVNFLGKGLHSYGWFF
>Mature_349_residues
ALLAITALAGMDLAQWQALLNNVAFAISLGAMLFYWGGAAFPQMQLLAELGLAGMIGANLTMAALLTARWIDAGYFPLSN
LYESLFFLAWGITALHLLALHWSRSRWVGVMTAPVVTGIVAFAALVLPEDMQVAQPLVPALQSNWLMMHVTVMLLAYAAL
LVGSLLSISFLIVTRGQEVHLKGNSLGLQFRPPQPQTHPEWAEATLPSPASELAYAGLRSPRPAPSSAELPPQPAPEGIP
WQRLSLAEILDNTSYRLIGLGFPLLTIGIIAGAVWANEAWGTYWSWDPKETWALITWLVFAAYLHARITKGWQGRRPALL
ASLGFGVVWVCYLGVNFLGKGLHSYGWFF

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCSA_SYNJB (Q2JQ31)

Other databases:

- EMBL:   CP000240
- RefSeq:   YP_476348.1
- STRING:   Q2JQ31
- GeneID:   3900066
- GenomeReviews:   CP000240_GR
- KEGG:   cyb:CYB_0084
- TIGR:   CYB_0084
- eggNOG:   COG0755
- HOGENOM:   HBG733666
- OMA:   YNLPALV
- ProtClustDB:   CLSK892624
- BioCyc:   SSP321332:CYB_0084-MONOMER
- HAMAP:   MF_01391
- InterPro:   IPR002541
- InterPro:   IPR017562
- TIGRFAMs:   TIGR03144

Pfam domain/function: PF01578 Cytochrom_C_asm

EC number: NA

Molecular weight: Translated: 38192; Mature: 38061

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1037c3ac)-; HASH(0xc8b99f8)-; HASH(0x1135747c)-; HASH(0xc278b74)-; HASH(0xe4c5e2c)-; HASH(0xb0ebf4c)-; HASH(0xe4c9294)-; HASH(0xf81fdc4)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLAITALAGMDLAQWQALLNNVAFAISLGAMLFYWGGAAFPQMQLLAELGLAGMIGAN
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHCH
LTMAALLTARWIDAGYFPLSNLYESLFFLAWGITALHLLALHWSRSRWVGVMTAPVVTGI
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHH
VAFAALVLPEDMQVAQPLVPALQSNWLMMHVTVMLLAYAALLVGSLLSISFLIVTRGQEV
HHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEE
HLKGNSLGLQFRPPQPQTHPEWAEATLPSPASELAYAGLRSPRPAPSSAELPPQPAPEGI
EEECCCEEEEECCCCCCCCCCHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PWQRLSLAEILDNTSYRLIGLGFPLLTIGIIAGAVWANEAWGTYWSWDPKETWALITWLV
CHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
FAAYLHARITKGWQGRRPALLASLGFGVVWVCYLGVNFLGKGLHSYGWFF
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure 
ALLAITALAGMDLAQWQALLNNVAFAISLGAMLFYWGGAAFPQMQLLAELGLAGMIGAN
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHCH
LTMAALLTARWIDAGYFPLSNLYESLFFLAWGITALHLLALHWSRSRWVGVMTAPVVTGI
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHH
VAFAALVLPEDMQVAQPLVPALQSNWLMMHVTVMLLAYAALLVGSLLSISFLIVTRGQEV
HHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEE
HLKGNSLGLQFRPPQPQTHPEWAEATLPSPASELAYAGLRSPRPAPSSAELPPQPAPEGI
EEECCCEEEEECCCCCCCCCCHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PWQRLSLAEILDNTSYRLIGLGFPLLTIGIIAGAVWANEAWGTYWSWDPKETWALITWLV
CHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
FAAYLHARITKGWQGRRPALLASLGFGVVWVCYLGVNFLGKGLHSYGWFF
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA