| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607569
Identifier: 86607569
GI number: 86607569
Start: 79074
End: 79838
Strand: Reverse
Name: 86607569
Synonym: CYB_0067
Alternate gene names: NA
Gene position: 79838-79074 (Counterclockwise)
Preceding gene: 86607570
Following gene: 86607568
Centisome position: 2.62
GC content: 58.3
Gene sequence:
>765_bases ATGACCTACTGCCTTGGCATCATCACCCGCTTTGGCTTGGTGATGGCGGCAGATTCCCGCACCAACGCCGGGGTGGACTA CGTCTCCACCTACCAAAAGCTGTTCGATTTTTCCGTGCCCGAAGAGCGGGTGATCTTGATCTGCACCTCCGGCAACCTGT CCATCACCCAGGGCGTTTTGACCGAAGTGCAGCGGGATCTGCGCCAACAGGAAAGTTCCAATCTCCACACCTTTCCCCAC CTCTACGACGTGGCCCGCTACCTGGGATCCAAAATTCGTTACATCCAGGAGCAAGACCGACCCTGGCTGGAAAAGGACGG TATCGACGCCCAGTGCAGCCTGTTGTTGGGGGGACAGATCCGAGGCGAGGAGCCGGCCCTCTTTTTGATCTACAGCCAGG GCAACTGCATCCAGGCCACCCCGGAAACCCCTTTTTTGCAGGTGGGGGAAACCAAATACGGCAAGCCAATCTTGGATCGC ACCCTCTCCTACGAAACCTCGCTAGCAGATGCGGCCAAATGCGCTCTCCTCTCCATTGACTCCACCATGAAATCCAACAT CTCCGTCGGCCCCCCCATCGATTTGGTGATGGTGCAAGCGGATCAGTTCAAGGTCACCCACCGTCTGCGCCTGCGCACCG GGGATCCCTACCTGGCCAAGATGCGCAAACTGTGGGAGAGCGCCCTCAAACAAGCCTTCGACCAAATGCCCCCCATCGAG TGGGACTACTCGGATCCAGCTGATCGGGAAGAGCTGCTCGACTGA
Upstream 100 bases:
>100_bases CGCCCGCCTGCGGGAGGAAATCCGCCACAAAATCGGATTTGCTTTCCCCTGAACCTCTACAATCGCCTCTACAATCAGAG AGCCGAGCCGCATCGTTCGC
Downstream 100 bases:
>100_bases GAGGAGGAGATTGGTAGGATAGGGGTTAATCCATCTCTGCCCAACCCCTGCCATGTCAGCCCACACCTTTCAAGACTTGA TCTTTCGCCTGCAACAGTTT
Product: T1 family peptidase
Products: NA
Alternate protein names: Proteasome-Type Protease; 20S Proteasome A/B Subunit; Peptidase T1 Family; 20S Proteasome A And Subunit Bs; Peptidase T1A Family; T1 Family Peptidase; 20S Proteasome Subunits A/B; A And B-Type Proteasome Family Protein; Proteasome-Type Protease-Like Protein; Proteasome Protease; T1A Family Peptidase; Proteasome A-Type And B-Type Family Protein; Proteasome Alpha-1 Subunit; 20S Proteasome A And B Subunit
Number of amino acids: Translated: 254; Mature: 253
Protein sequence:
>254_residues MTYCLGIITRFGLVMAADSRTNAGVDYVSTYQKLFDFSVPEERVILICTSGNLSITQGVLTEVQRDLRQQESSNLHTFPH LYDVARYLGSKIRYIQEQDRPWLEKDGIDAQCSLLLGGQIRGEEPALFLIYSQGNCIQATPETPFLQVGETKYGKPILDR TLSYETSLADAAKCALLSIDSTMKSNISVGPPIDLVMVQADQFKVTHRLRLRTGDPYLAKMRKLWESALKQAFDQMPPIE WDYSDPADREELLD
Sequences:
>Translated_254_residues MTYCLGIITRFGLVMAADSRTNAGVDYVSTYQKLFDFSVPEERVILICTSGNLSITQGVLTEVQRDLRQQESSNLHTFPH LYDVARYLGSKIRYIQEQDRPWLEKDGIDAQCSLLLGGQIRGEEPALFLIYSQGNCIQATPETPFLQVGETKYGKPILDR TLSYETSLADAAKCALLSIDSTMKSNISVGPPIDLVMVQADQFKVTHRLRLRTGDPYLAKMRKLWESALKQAFDQMPPIE WDYSDPADREELLD >Mature_253_residues TYCLGIITRFGLVMAADSRTNAGVDYVSTYQKLFDFSVPEERVILICTSGNLSITQGVLTEVQRDLRQQESSNLHTFPHL YDVARYLGSKIRYIQEQDRPWLEKDGIDAQCSLLLGGQIRGEEPALFLIYSQGNCIQATPETPFLQVGETKYGKPILDRT LSYETSLADAAKCALLSIDSTMKSNISVGPPIDLVMVQADQFKVTHRLRLRTGDPYLAKMRKLWESALKQAFDQMPPIEW DYSDPADREELLD
Specific function: Unknown
COG id: COG3484
COG function: function code O; Predicted proteasome-type protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28695; Mature: 28564
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYCLGIITRFGLVMAADSRTNAGVDYVSTYQKLFDFSVPEERVILICTSGNLSITQGVL CHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHH TEVQRDLRQQESSNLHTFPHLYDVARYLGSKIRYIQEQDRPWLEKDGIDAQCSLLLGGQI HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCEE RGEEPALFLIYSQGNCIQATPETPFLQVGETKYGKPILDRTLSYETSLADAAKCALLSID CCCCCEEEEEECCCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEC STMKSNISVGPPIDLVMVQADQFKVTHRLRLRTGDPYLAKMRKLWESALKQAFDQMPPIE HHHHCCCCCCCCCEEEEEECCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC WDYSDPADREELLD CCCCCCCCHHHHCC >Mature Secondary Structure TYCLGIITRFGLVMAADSRTNAGVDYVSTYQKLFDFSVPEERVILICTSGNLSITQGVL HHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHH TEVQRDLRQQESSNLHTFPHLYDVARYLGSKIRYIQEQDRPWLEKDGIDAQCSLLLGGQI HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCEE RGEEPALFLIYSQGNCIQATPETPFLQVGETKYGKPILDRTLSYETSLADAAKCALLSID CCCCCEEEEEECCCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEC STMKSNISVGPPIDLVMVQADQFKVTHRLRLRTGDPYLAKMRKLWESALKQAFDQMPPIE HHHHCCCCCCCCCEEEEEECCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC WDYSDPADREELLD CCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA