Definition | Rhizobium etli CFN 42 plasmid p42f, complete sequence. |
---|---|
Accession | NC_007766 |
Length | 642,517 |
Click here to switch to the map view.
The map label for this gene is 86361013
Identifier: 86361013
GI number: 86361013
Start: 313168
End: 314388
Strand: Reverse
Name: 86361013
Synonym: RHE_PF00283
Alternate gene names: NA
Gene position: 314388-313168 (Counterclockwise)
Preceding gene: 86361014
Following gene: 86361012
Centisome position: 48.93
GC content: 63.96
Gene sequence:
>1221_bases ATGGCGAATGATGACGTGGACAGAACCACAGGCCGGAGAGCGTCTGGCCTTGAGGGAAACGGATCGATAATGCAGCGGCA TTTCCGAGGCTTGCCAAAGGCAATACCGGCGATCATCGTCGCCATCGGCCTGGCGATGCTTGCCGGCTGCGCCACGCGGC CATCGCCTGAGGTCTTGACGCCTGTGCATCTGAGCGAGCCGGCCGGTTCGGAAACGGCTCCGGACAGGGTGGGCGTGCTC GTCGCGACCAACAGAACCCCCGATCGCGTGCGGGGCGGATTCGACAGCACATGGTCAGAGAAGCTGACCTATGAGCAGTA CGCGTTTTCGGTTCCTCCCGGTAGGAAGGATACCGCGATCACCTATCCCAGGGCAAAGCCGGACCCCGAACGCCAATTTG CCGTCATCGAGCGCAGGCAGCTGCCGAAGGAGGCTTTCGTACAGCAGGCGCTCGCCGCCGTGCCGCCCGAAGGCACCGTC GGCATCTTCGTCCATGGCTACAACTACAGTTACCAGGAGGCGCTTTACCGCACCGCGCAGATCGCCGCCGACGCGAAGAT CCCGGGCGCTCCGATCCTGTTTTCCTGGCCGTCGGCGGCATCCGTAGCCGGATATGTCGCCGACCGCGACGCCGCGCTTT CCTCGCGCAGCGAACTTAATTCCCTCGTCACATCGCTCTCGGCATCGGCCAAGGTGAAGCGCATCATCCTGTTCGGGCAC AGCATGGGCGGTTTTCTGGTGATGGAAACGGTGCGAGAACTCAAGCTGCAGCATCGCGACGCCGTGATTGGCAAGCTGGC GGTGGTGCTCGCCGCTCCTGACATCGACGTCGATGTCTTCCGGTCGCAGCTGAAGGACATCGGTCCAATGCCGAACCCGA TCTCCCTCCTGGTTTCCAGGGACGACCGGGCGCTTGTGGCCTCAAGCTTCATCGCCGGCGAACGGGCGCGCGTCGGCCGC CTCGATATCGACGATCCCGTCATCCAGAAGGCGGCCTTGCAGGCCAGGCTCCGGGTCATCGACATTACCTCGATCAAGAC CTCCGACGGGTTGGGCCACGACCGCTACGCATCACTCGCGAAGTTCGGCGCCCAGCTTGCTTCCTTCGAAAGCGGCGGGC GGTCGACCGCCGGCGATGTCGGCGCCTTCGTGTTCGATGCCGCAGGCGCCGCAGTCGCAAGCCCGTTTCGCTTGGCAGGA CGTGTCGTTCGCTCGCAATAG
Upstream 100 bases:
>100_bases CCATCGCCTACGGCCGCCGCGGCGGCCGCTGCAACACGGGCCGCGACGAAATAGGTGGGATGGCGCGGGCGATGCCATCC CACACCCGAGCGGGAAGGGC
Downstream 100 bases:
>100_bases GCCGATAGCCTGTAAATCTGGTTGATCAGGATTGTGTACAATGTGACTATTAAATTGTCAGATGCCTAAATGAAGCGCAG ACTTCCATCGTGGCCGAGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MANDDVDRTTGRRASGLEGNGSIMQRHFRGLPKAIPAIIVAIGLAMLAGCATRPSPEVLTPVHLSEPAGSETAPDRVGVL VATNRTPDRVRGGFDSTWSEKLTYEQYAFSVPPGRKDTAITYPRAKPDPERQFAVIERRQLPKEAFVQQALAAVPPEGTV GIFVHGYNYSYQEALYRTAQIAADAKIPGAPILFSWPSAASVAGYVADRDAALSSRSELNSLVTSLSASAKVKRIILFGH SMGGFLVMETVRELKLQHRDAVIGKLAVVLAAPDIDVDVFRSQLKDIGPMPNPISLLVSRDDRALVASSFIAGERARVGR LDIDDPVIQKAALQARLRVIDITSIKTSDGLGHDRYASLAKFGAQLASFESGGRSTAGDVGAFVFDAAGAAVASPFRLAG RVVRSQ
Sequences:
>Translated_406_residues MANDDVDRTTGRRASGLEGNGSIMQRHFRGLPKAIPAIIVAIGLAMLAGCATRPSPEVLTPVHLSEPAGSETAPDRVGVL VATNRTPDRVRGGFDSTWSEKLTYEQYAFSVPPGRKDTAITYPRAKPDPERQFAVIERRQLPKEAFVQQALAAVPPEGTV GIFVHGYNYSYQEALYRTAQIAADAKIPGAPILFSWPSAASVAGYVADRDAALSSRSELNSLVTSLSASAKVKRIILFGH SMGGFLVMETVRELKLQHRDAVIGKLAVVLAAPDIDVDVFRSQLKDIGPMPNPISLLVSRDDRALVASSFIAGERARVGR LDIDDPVIQKAALQARLRVIDITSIKTSDGLGHDRYASLAKFGAQLASFESGGRSTAGDVGAFVFDAAGAAVASPFRLAG RVVRSQ >Mature_405_residues ANDDVDRTTGRRASGLEGNGSIMQRHFRGLPKAIPAIIVAIGLAMLAGCATRPSPEVLTPVHLSEPAGSETAPDRVGVLV ATNRTPDRVRGGFDSTWSEKLTYEQYAFSVPPGRKDTAITYPRAKPDPERQFAVIERRQLPKEAFVQQALAAVPPEGTVG IFVHGYNYSYQEALYRTAQIAADAKIPGAPILFSWPSAASVAGYVADRDAALSSRSELNSLVTSLSASAKVKRIILFGHS MGGFLVMETVRELKLQHRDAVIGKLAVVLAAPDIDVDVFRSQLKDIGPMPNPISLLVSRDDRALVASSFIAGERARVGRL DIDDPVIQKAALQARLRVIDITSIKTSDGLGHDRYASLAKFGAQLASFESGGRSTAGDVGAFVFDAAGAAVASPFRLAGR VVRSQ
Specific function: Unknown
COG id: COG4782
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43360; Mature: 43229
Theoretical pI: Translated: 9.77; Mature: 9.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANDDVDRTTGRRASGLEGNGSIMQRHFRGLPKAIPAIIVAIGLAMLAGCATRPSPEVLT CCCCCCCHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PVHLSEPAGSETAPDRVGVLVATNRTPDRVRGGFDSTWSEKLTYEQYAFSVPPGRKDTAI CEECCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCHHHHHHHHHEEEECCCCCCCCEE TYPRAKPDPERQFAVIERRQLPKEAFVQQALAAVPPEGTVGIFVHGYNYSYQEALYRTAQ ECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHH IAADAKIPGAPILFSWPSAASVAGYVADRDAALSSRSELNSLVTSLSASAKVKRIILFGH HHHCCCCCCCCEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEC SMGGFLVMETVRELKLQHRDAVIGKLAVVLAAPDIDVDVFRSQLKDIGPMPNPISLLVSR CCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEC DDRALVASSFIAGERARVGRLDIDDPVIQKAALQARLRVIDITSIKTSDGLGHDRYASLA CCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHHHH KFGAQLASFESGGRSTAGDVGAFVFDAAGAAVASPFRLAGRVVRSQ HHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHCHHHHHHHHHHCC >Mature Secondary Structure ANDDVDRTTGRRASGLEGNGSIMQRHFRGLPKAIPAIIVAIGLAMLAGCATRPSPEVLT CCCCCCHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PVHLSEPAGSETAPDRVGVLVATNRTPDRVRGGFDSTWSEKLTYEQYAFSVPPGRKDTAI CEECCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCHHHHHHHHHEEEECCCCCCCCEE TYPRAKPDPERQFAVIERRQLPKEAFVQQALAAVPPEGTVGIFVHGYNYSYQEALYRTAQ ECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHH IAADAKIPGAPILFSWPSAASVAGYVADRDAALSSRSELNSLVTSLSASAKVKRIILFGH HHHCCCCCCCCEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEC SMGGFLVMETVRELKLQHRDAVIGKLAVVLAAPDIDVDVFRSQLKDIGPMPNPISLLVSR CCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEC DDRALVASSFIAGERARVGRLDIDDPVIQKAALQARLRVIDITSIKTSDGLGHDRYASLA CCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHHHH KFGAQLASFESGGRSTAGDVGAFVFDAAGAAVASPFRLAGRVVRSQ HHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA