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The map label for this gene is bkdR [H]

Identifier: 86361002

GI number: 86361002

Start: 295763

End: 296230

Strand: Reverse

Name: bkdR [H]

Synonym: RHE_PF00272

Alternate gene names: 86361002

Gene position: 296230-295763 (Counterclockwise)

Preceding gene: 86361005

Following gene: 86360995

Centisome position: 46.1

GC content: 56.62

Gene sequence:

>468_bases
ATGCTTGACCCATTTGATATCAAACTGCTCGCCGCTCTCCAGCGGAACAGCGAGCTGACGCAGGGCGAACTCTCTCGGAA
GGTCAATCTCTCGGCGACTCAATGCGCCCGCCGTTTGGAAAGGCTGCGCAACGAGCAATATATTCAGAGCGTCGTCGCCA
TCCTCAATCCGGTGAAGCTGGGCTTCACCGTCGTTGCCCATACGCTTGTCAGCCTGCGCGCGCACACGGAAGGCGGAAAC
GAGAGGCTCCATCGTTTCATCGAGACCGCGCCCGAGATCCTGGAATGTTATTCGCAGACGGGTGACGCCGACTTTCTGAT
GAAGGTCATGACGCGCGACCTCGACCATCTTAGCCAGTTTCTCGAAAGAATGATCCGGGTCACCGACAATCTGGCATCGG
TCAAATCGAGCATCGTCCTCAAGACGATCAAAAAGACGACCGCTTTGCCGCTGCAGATCGTGACCTGA

Upstream 100 bases:

>100_bases
AATTTCTGCGATTATCCTCCTGCTTTGACGTAATTGTGCAGATAATCTGCGTTATATCGGTATAACGTGCAGAAACTCAC
CTCATTCGGGGCCGATGATC

Downstream 100 bases:

>100_bases
GGGCAGCTCCAGTCGCTCTCACTTGATATAATGGATATGCGGGCGCGAATGATAGGGGGAGGCTTCGATGCGGGCCTCGA
CCGAAAAGACCTCGCGCAGC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MLDPFDIKLLAALQRNSELTQGELSRKVNLSATQCARRLERLRNEQYIQSVVAILNPVKLGFTVVAHTLVSLRAHTEGGN
ERLHRFIETAPEILECYSQTGDADFLMKVMTRDLDHLSQFLERMIRVTDNLASVKSSIVLKTIKKTTALPLQIVT

Sequences:

>Translated_155_residues
MLDPFDIKLLAALQRNSELTQGELSRKVNLSATQCARRLERLRNEQYIQSVVAILNPVKLGFTVVAHTLVSLRAHTEGGN
ERLHRFIETAPEILECYSQTGDADFLMKVMTRDLDHLSQFLERMIRVTDNLASVKSSIVLKTIKKTTALPLQIVT
>Mature_155_residues
MLDPFDIKLLAALQRNSELTQGELSRKVNLSATQCARRLERLRNEQYIQSVVAILNPVKLGFTVVAHTLVSLRAHTEGGN
ERLHRFIETAPEILECYSQTGDADFLMKVMTRDLDHLSQFLERMIRVTDNLASVKSSIVLKTIKKTTALPLQIVT

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=152, Percent_Identity=34.2105263157895, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=27.027027027027, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17518; Mature: 17518

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDPFDIKLLAALQRNSELTQGELSRKVNLSATQCARRLERLRNEQYIQSVVAILNPVKL
CCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFTVVAHTLVSLRAHTEGGNERLHRFIETAPEILECYSQTGDADFLMKVMTRDLDHLSQF
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LERMIRVTDNLASVKSSIVLKTIKKTTALPLQIVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure
MLDPFDIKLLAALQRNSELTQGELSRKVNLSATQCARRLERLRNEQYIQSVVAILNPVKL
CCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFTVVAHTLVSLRAHTEGGNERLHRFIETAPEILECYSQTGDADFLMKVMTRDLDHLSQF
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LERMIRVTDNLASVKSSIVLKTIKKTTALPLQIVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8320210 [H]