The gene/protein map for NC_007766 is currently unavailable.
Definition Rhizobium etli CFN 42 plasmid p42f, complete sequence.
Accession NC_007766
Length 642,517

Click here to switch to the map view.

The map label for this gene is ygfF [C]

Identifier: 86360875

GI number: 86360875

Start: 151711

End: 152451

Strand: Reverse

Name: ygfF [C]

Synonym: RHE_PF00144

Alternate gene names: 86360875

Gene position: 152451-151711 (Counterclockwise)

Preceding gene: 86360878

Following gene: 86360874

Centisome position: 23.73

GC content: 63.43

Gene sequence:

>741_bases
ATGACCATCAAAGGACAGCGCGTCGCTATCGTCACCGGCGCATCGAAAGGCATCGGCCGAGCCATTGCGCTCCGGCTGGC
GCAAGACGGCGTCGCCGTCGTGGTGAATTACGCAAGCAGCCTTCAGGCGGCTGATGCGGTCGTCGCAGACATTGAATTGG
CCGGCGGAAAGGCTCTCGCGGTGCAGGTTGACATAAGCGGTCCGGCCGCGGCTGCCGATCTGTTCACCGCGGCCGAAGAG
CGCTTCGGCGGGACCGACATCCTGGTCAACAATGCCGGGATCATAAAACTGGCTCCGATTGCCGATTCGGACGACGCGAG
TTTCGAGCAGCAGATCGCCATAAACCTCACAGGGACATTCCGCGCCGTGCGCGAAGCAGCCCGTCGGCTCCGCGATGGTG
GGCGCATCATCAATTTCTCTTCCAGCGTCGTCGGCGCTTACGGGCCGAGTTACGGTGTCTATGCCGCAAGCAAAGCGGCC
GTCGAGGCGATCACGCACGTCGCCTCGAAGGAACTCGGCCGGCGCGGCATAACCGTCAATGCGGTCGCGCCCGGTCCCGT
CGAGACAGAACTGTTCATGTCCGGCAAGCCCGACGAACTGGTCCAGCGAATTGTCGGCACCATTCCGCTGGGGCGCCTAG
GCCAACCGGACGACATTGCCTCGGTCGTTTCCTTCCTTGCCGGTCCGGAAGGCGGCTGGGTGAACGGTCAGGTGCTACGC
GCCAATGGCGGCATGATCTGA

Upstream 100 bases:

>100_bases
TCTTTATTCACCATAGCCGAATTATGTTGTCAAATGTTGTCGGATTGTTCTTCTGGGTCGCCGGCAATACCTCCTGTCCG
TAAAATAGGAGAAAGGTGAC

Downstream 100 bases:

>100_bases
AGCAGAACCCCCAAGAAAGGAGAGTCCTATGCCATTCGTTAACATAAAGACCCCTGAAGGCGCGCTCAGCCGCTCCCAGA
AGGAAGAAATCGTGCACAGA

Product: 3-oxoacyl-[acyl-carrier-protein] reductase protein

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTIKGQRVAIVTGASKGIGRAIALRLAQDGVAVVVNYASSLQAADAVVADIELAGGKALAVQVDISGPAAAADLFTAAEE
RFGGTDILVNNAGIIKLAPIADSDDASFEQQIAINLTGTFRAVREAARRLRDGGRIINFSSSVVGAYGPSYGVYAASKAA
VEAITHVASKELGRRGITVNAVAPGPVETELFMSGKPDELVQRIVGTIPLGRLGQPDDIASVVSFLAGPEGGWVNGQVLR
ANGGMI

Sequences:

>Translated_246_residues
MTIKGQRVAIVTGASKGIGRAIALRLAQDGVAVVVNYASSLQAADAVVADIELAGGKALAVQVDISGPAAAADLFTAAEE
RFGGTDILVNNAGIIKLAPIADSDDASFEQQIAINLTGTFRAVREAARRLRDGGRIINFSSSVVGAYGPSYGVYAASKAA
VEAITHVASKELGRRGITVNAVAPGPVETELFMSGKPDELVQRIVGTIPLGRLGQPDDIASVVSFLAGPEGGWVNGQVLR
ANGGMI
>Mature_245_residues
TIKGQRVAIVTGASKGIGRAIALRLAQDGVAVVVNYASSLQAADAVVADIELAGGKALAVQVDISGPAAAADLFTAAEER
FGGTDILVNNAGIIKLAPIADSDDASFEQQIAINLTGTFRAVREAARRLRDGGRIINFSSSVVGAYGPSYGVYAASKAAV
EAITHVASKELGRRGITVNAVAPGPVETELFMSGKPDELVQRIVGTIPLGRLGQPDDIASVVSFLAGPEGGWVNGQVLRA
NGGMI

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=37.5, Blast_Score=122, Evalue=3e-28,
Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=33.8842975206612, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=33.9920948616601, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI10190704, Length=245, Percent_Identity=34.2857142857143, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI5031737, Length=237, Percent_Identity=30.8016877637131, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=28.2868525896414, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI59889578, Length=219, Percent_Identity=31.5068493150685, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=29.9212598425197, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI4504505, Length=254, Percent_Identity=30.3149606299213, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI109715829, Length=234, Percent_Identity=29.0598290598291, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=29.2490118577075, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI31542939, Length=209, Percent_Identity=32.0574162679426, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI4503301, Length=195, Percent_Identity=28.2051282051282, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI4557649, Length=218, Percent_Identity=26.605504587156, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI4758504, Length=270, Percent_Identity=28.5185185185185, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=32.1243523316062, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI40254986, Length=185, Percent_Identity=29.7297297297297, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI225579078, Length=208, Percent_Identity=31.7307692307692, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI209862901, Length=208, Percent_Identity=29.3269230769231, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI19923983, Length=208, Percent_Identity=29.3269230769231, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI224922801, Length=185, Percent_Identity=31.3513513513514, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI7657478, Length=192, Percent_Identity=31.7708333333333, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI66933014, Length=180, Percent_Identity=26.1111111111111, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=39.1836734693878, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=34.9206349206349, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=39.2, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787905, Length=240, Percent_Identity=35.4166666666667, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1789378, Length=243, Percent_Identity=35.8024691358025, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=33.6065573770492, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=31.9838056680162, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=33.0543933054393, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790717, Length=240, Percent_Identity=29.1666666666667, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=31.3492063492063, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=29.9610894941634, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=29.7297297297297, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1786701, Length=194, Percent_Identity=32.4742268041237, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787526, Length=253, Percent_Identity=26.4822134387352, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=33.3333333333333, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17560676, Length=244, Percent_Identity=31.5573770491803, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=31.3207547169811, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=30.9433962264151, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=33.0645161290323, Blast_Score=103, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17531453, Length=259, Percent_Identity=30.8880308880309, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=29.4354838709677, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI193204405, Length=255, Percent_Identity=32.156862745098, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=31.7269076305221, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17536651, Length=248, Percent_Identity=31.0483870967742, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17562904, Length=259, Percent_Identity=29.7297297297297, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=31.8352059925094, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=31.4741035856574, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=30.2325581395349, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17562908, Length=259, Percent_Identity=31.2741312741313, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=254, Percent_Identity=29.5275590551181, Blast_Score=97, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17538486, Length=260, Percent_Identity=31.9230769230769, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17561272, Length=236, Percent_Identity=31.7796610169492, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=30, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=252, Percent_Identity=29.7619047619048, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17560220, Length=255, Percent_Identity=30.9803921568627, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17538480, Length=260, Percent_Identity=32.3076923076923, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=31.3953488372093, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI72000259, Length=254, Percent_Identity=30.3149606299213, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=31.9391634980989, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=31.0344827586207, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71982365, Length=188, Percent_Identity=30.8510638297872, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17558628, Length=189, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI115534694, Length=241, Percent_Identity=30.2904564315353, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17508651, Length=254, Percent_Identity=29.1338582677165, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17568967, Length=234, Percent_Identity=30.3418803418803, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=244, Percent_Identity=27.4590163934426, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17555612, Length=220, Percent_Identity=31.8181818181818, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=253, Percent_Identity=29.2490118577075, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71997099, Length=204, Percent_Identity=32.3529411764706, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=198, Percent_Identity=28.7878787878788, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=204, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17507613, Length=204, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=190, Percent_Identity=34.7368421052632, Blast_Score=87, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6324126, Length=168, Percent_Identity=30.3571428571429, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=186, Percent_Identity=30.6451612903226, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6323882, Length=235, Percent_Identity=29.3617021276596, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=38.2113821138211, Blast_Score=140, Evalue=7e-34,
Organism=Drosophila melanogaster, GI21355319, Length=243, Percent_Identity=32.0987654320988, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=34.5238095238095, Blast_Score=100, Evalue=9e-22,
Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=32.6612903225806, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=31.5789473684211, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24644339, Length=245, Percent_Identity=29.3877551020408, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI17737361, Length=253, Percent_Identity=29.6442687747036, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24643142, Length=243, Percent_Identity=28.3950617283951, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24648693, Length=237, Percent_Identity=30.8016877637131, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI21355889, Length=237, Percent_Identity=30.8016877637131, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24644337, Length=188, Percent_Identity=31.3829787234043, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24663911, Length=235, Percent_Identity=29.3617021276596, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI18859837, Length=250, Percent_Identity=31.2, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI116007234, Length=236, Percent_Identity=31.7796610169492, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24641232, Length=259, Percent_Identity=30.8880308880309, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21357673, Length=189, Percent_Identity=31.7460317460317, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648944, Length=245, Percent_Identity=29.7959183673469, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24641388, Length=240, Percent_Identity=29.5833333333333, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI28571387, Length=254, Percent_Identity=29.9212598425197, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI116007236, Length=198, Percent_Identity=29.2929292929293, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24656154, Length=209, Percent_Identity=30.1435406698565, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI19922628, Length=209, Percent_Identity=30.1435406698565, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281364494, Length=263, Percent_Identity=26.615969581749, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI116007232, Length=178, Percent_Identity=33.1460674157303, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 25151; Mature: 25020

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MTIKGQRVAIVTGASKGIGRAIALRLAQDGVAVVVNYASSLQAADAVVADIELAGGKALA
CCCCCCEEEEEECCCCCCCHHEEEEECCCCEEEEEECHHHHHHHHHEEEEEEECCCEEEE
VQVDISGPAAAADLFTAAEERFGGTDILVNNAGIIKLAPIADSDDASFEQQIAINLTGTF
EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCEEEEEEEECHHH
RAVREAARRLRDGGRIINFSSSVVGAYGPSYGVYAASKAAVEAITHVASKELGRRGITVN
HHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
AVAPGPVETELFMSGKPDELVQRIVGTIPLGRLGQPDDIASVVSFLAGPEGGWVNGQVLR
EECCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEE
ANGGMI
CCCCCC
>Mature Secondary Structure 
TIKGQRVAIVTGASKGIGRAIALRLAQDGVAVVVNYASSLQAADAVVADIELAGGKALA
CCCCCEEEEEECCCCCCCHHEEEEECCCCEEEEEECHHHHHHHHHEEEEEEECCCEEEE
VQVDISGPAAAADLFTAAEERFGGTDILVNNAGIIKLAPIADSDDASFEQQIAINLTGTF
EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCEEEEEEEECHHH
RAVREAARRLRDGGRIINFSSSVVGAYGPSYGVYAASKAAVEAITHVASKELGRRGITVN
HHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
AVAPGPVETELFMSGKPDELVQRIVGTIPLGRLGQPDDIASVVSFLAGPEGGWVNGQVLR
EECCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEE
ANGGMI
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]