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The map label for this gene is rbcL

Identifier: 86360776

GI number: 86360776

Start: 43019

End: 44272

Strand: Reverse

Name: rbcL

Synonym: RHE_PF00042

Alternate gene names: NA

Gene position: 44272-43019 (Counterclockwise)

Preceding gene: 86360785

Following gene: 86360775

Centisome position: 6.89

GC content: 65.31

Gene sequence:

>1254_bases
ATGATAACCCTGACCTACCGCATCGAAACGCCCGGCAGCGTCGAGACGATGGCGGACAAGATCGCCAGCGACCAGTCGAC
CGGAACCTTCGTGCCGGTTCCCGGCGAGACGGAAGAGCTGAAATCGCGCGTCGCCGCCCGGGTTTTGGCGATCCGCCCGC
TCGAGAATGCGCGCCATCCGACCTGGCCCGAGTCCGCGCCCGACACGCTGCTCCACCGCGCCGACGTCGACATTGCCTTC
CCTCTGGAGGCGATCGGCACAGATCTCTCGGCGCTGATGACCATCGCGATCGGCGGCGTCTATTCGATCAAGGGCATGAC
CGGCATCCGCATCGTCGACATGAAGCTGCCCGAAGCTTTCCGGAGCGCCCATCCCGGGCCGCAATTCGGCATAGCGGGCA
GCCGCCGCCTCACCGGCGTCGAGGGCCGCCCGATCATCGGCACGATCGTCAAGCCGGCACTGGGGCTGAGGCCGCACGAG
ACGGCGGAACTCGTCGGCGAATTGATTGGGTCGGGCGTCGACTTCATCAAGGACGATGAGAAGCTGATGAGCCCGGCCTA
TTCGCCGCTCAAGGAGCGCGTCGCCGCGATCATGCCGCGCATTCTCGATCACGAGCAGAAGACCGGCAAGAAGGTCATGT
ATGCCTTCGGCATCTCGCATGCCGATCCCGACGAGATGATGCGCAACCACGATATCGTCGCTGCGGCCGGCGGCAATTGC
GCCGTCGTCAATATCAATTCGATCGGCTTCGGCGGCATGAGCTTCCTGCGCAAGCGCTCCAGCCTGGTGCTGCATGCGCA
TCGCAACGGCTGGGATGTGCTGACGCGCGATCCGGGCGCCGGCATGGATTTCAAGGTCTATCAGCAGTTCTGGCGGCTGC
TCGGCGTCGACCAGTTCCAGATCAACGGCATCAGAATCAAATATTGGGAGCCGGACGAGAGCTTCGTCTCTTCCTTCAAG
GCCGTCAGCACGCCGCTCTTCGATGCCGCCGATTGCCCGCTTCCGGTCGCGGGCTCCGGCCAGTGGGGCGGGCAGGCGCC
GGAGACCTACGAGCGCACCGGCCGCACCATCGATCTTCTCTATCTCTGCGGCGGCGGCATCGTCAGCCATCCCGGCGGTC
CTGCTGCCGGCGTGCGCGCCGTGCAGCAGGCCTGGCAGGCGGCGGTCGCCGGCATTCCGCTGGAGGTCTATGCCAAGGAT
CATCCGGAGCTTGCCGCCTCGATTGCCAAATTCAGCGACGGCAAGGGCGCGTGA

Upstream 100 bases:

>100_bases
GAAGATTCCGCTTTTCAACAGTTGGAGTACTCATTATACCAGATCACGAGTTGGCGCCATGACAATCTCCATGGCGAGAG
GAGCAGCCGGCCGTTTCATG

Downstream 100 bases:

>100_bases
CGGCGATGGATGGAGTTCTCGTCAGCTATTACGGGGATGATTTCACCGGCTCCACCGACGTCATGGAGGCGCTCGCCTCG
AACGGCGTCGAGACCGTGCT

Product: ribulose bisphosphate carboxylaseoxygenase, large subunit protein

Products: 3-phospho-D-glycerate; H+

Alternate protein names: RuBisCO-like protein [H]

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MITLTYRIETPGSVETMADKIASDQSTGTFVPVPGETEELKSRVAARVLAIRPLENARHPTWPESAPDTLLHRADVDIAF
PLEAIGTDLSALMTIAIGGVYSIKGMTGIRIVDMKLPEAFRSAHPGPQFGIAGSRRLTGVEGRPIIGTIVKPALGLRPHE
TAELVGELIGSGVDFIKDDEKLMSPAYSPLKERVAAIMPRILDHEQKTGKKVMYAFGISHADPDEMMRNHDIVAAAGGNC
AVVNINSIGFGGMSFLRKRSSLVLHAHRNGWDVLTRDPGAGMDFKVYQQFWRLLGVDQFQINGIRIKYWEPDESFVSSFK
AVSTPLFDAADCPLPVAGSGQWGGQAPETYERTGRTIDLLYLCGGGIVSHPGGPAAGVRAVQQAWQAAVAGIPLEVYAKD
HPELAASIAKFSDGKGA

Sequences:

>Translated_417_residues
MITLTYRIETPGSVETMADKIASDQSTGTFVPVPGETEELKSRVAARVLAIRPLENARHPTWPESAPDTLLHRADVDIAF
PLEAIGTDLSALMTIAIGGVYSIKGMTGIRIVDMKLPEAFRSAHPGPQFGIAGSRRLTGVEGRPIIGTIVKPALGLRPHE
TAELVGELIGSGVDFIKDDEKLMSPAYSPLKERVAAIMPRILDHEQKTGKKVMYAFGISHADPDEMMRNHDIVAAAGGNC
AVVNINSIGFGGMSFLRKRSSLVLHAHRNGWDVLTRDPGAGMDFKVYQQFWRLLGVDQFQINGIRIKYWEPDESFVSSFK
AVSTPLFDAADCPLPVAGSGQWGGQAPETYERTGRTIDLLYLCGGGIVSHPGGPAAGVRAVQQAWQAAVAGIPLEVYAKD
HPELAASIAKFSDGKGA
>Mature_417_residues
MITLTYRIETPGSVETMADKIASDQSTGTFVPVPGETEELKSRVAARVLAIRPLENARHPTWPESAPDTLLHRADVDIAF
PLEAIGTDLSALMTIAIGGVYSIKGMTGIRIVDMKLPEAFRSAHPGPQFGIAGSRRLTGVEGRPIIGTIVKPALGLRPHE
TAELVGELIGSGVDFIKDDEKLMSPAYSPLKERVAAIMPRILDHEQKTGKKVMYAFGISHADPDEMMRNHDIVAAAGGNC
AVVNINSIGFGGMSFLRKRSSLVLHAHRNGWDVLTRDPGAGMDFKVYQQFWRLLGVDQFQINGIRIKYWEPDESFVSSFK
AVSTPLFDAADCPLPVAGSGQWGGQAPETYERTGRTIDLLYLCGGGIVSHPGGPAAGVRAVQQAWQAAVAGIPLEVYAKD
HPELAASIAKFSDGKGA

Specific function: May be involved in sulfur metabolism and oxidative stress response. Does not show RuBisCO activity [H]

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type IV subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020878
- InterPro:   IPR000685
- InterPro:   IPR017443 [H]

Pfam domain/function: PF00016 RuBisCO_large [H]

EC number: 4.1.1.39

Molecular weight: Translated: 44834; Mature: 44834

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITLTYRIETPGSVETMADKIASDQSTGTFVPVPGETEELKSRVAARVLAIRPLENARHP
CEEEEEEECCCCCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHEECCCCCCCC
TWPESAPDTLLHRADVDIAFPLEAIGTDLSALMTIAIGGVYSIKGMTGIRIVDMKLPEAF
CCCCCCHHHHHHHCCCCEECCHHHHCCCHHHHHHHHHCCEEEECCCCCEEEEEEECCHHH
RSAHPGPQFGIAGSRRLTGVEGRPIIGTIVKPALGLRPHETAELVGELIGSGVDFIKDDE
HCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHCCCH
KLMSPAYSPLKERVAAIMPRILDHEQKTGKKVMYAFGISHADPDEMMRNHDIVAAAGGNC
HHHCCCHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCCHHHHHHCCCEEEECCCCE
AVVNINSIGFGGMSFLRKRSSLVLHAHRNGWDVLTRDPGAGMDFKVYQQFWRLLGVDQFQ
EEEEECCCCCCHHHHHHHCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEE
INGIRIKYWEPDESFVSSFKAVSTPLFDAADCPLPVAGSGQWGGQAPETYERTGRTIDLL
ECCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEE
YLCGGGIVSHPGGPAAGVRAVQQAWQAAVAGIPLEVYAKDHPELAASIAKFSDGKGA
EEECCCEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MITLTYRIETPGSVETMADKIASDQSTGTFVPVPGETEELKSRVAARVLAIRPLENARHP
CEEEEEEECCCCCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHEECCCCCCCC
TWPESAPDTLLHRADVDIAFPLEAIGTDLSALMTIAIGGVYSIKGMTGIRIVDMKLPEAF
CCCCCCHHHHHHHCCCCEECCHHHHCCCHHHHHHHHHCCEEEECCCCCEEEEEEECCHHH
RSAHPGPQFGIAGSRRLTGVEGRPIIGTIVKPALGLRPHETAELVGELIGSGVDFIKDDE
HCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHCCCH
KLMSPAYSPLKERVAAIMPRILDHEQKTGKKVMYAFGISHADPDEMMRNHDIVAAAGGNC
HHHCCCHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCCHHHHHHCCCEEEECCCCE
AVVNINSIGFGGMSFLRKRSSLVLHAHRNGWDVLTRDPGAGMDFKVYQQFWRLLGVDQFQ
EEEEECCCCCCHHHHHHHCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEE
INGIRIKYWEPDESFVSSFKAVSTPLFDAADCPLPVAGSGQWGGQAPETYERTGRTIDLL
ECCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEE
YLCGGGIVSHPGGPAAGVRAVQQAWQAAVAGIPLEVYAKDHPELAASIAKFSDGKGA
EEECCCEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-ribulose 1,5-bisphosphate; CO2; H2O

Specific reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate + 2 H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12910271 [H]