| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85859354
Identifier: 85859354
GI number: 85859354
Start: 1549832
End: 1550755
Strand: Direct
Name: 85859354
Synonym: SYN_00385
Alternate gene names: NA
Gene position: 1549832-1550755 (Clockwise)
Preceding gene: 85859353
Following gene: 85859357
Centisome position: 48.75
GC content: 55.74
Gene sequence:
>924_bases GTGAAGAAGAAGTGGCCTGTATTCAGTAAGTTATTCATCATGGTGGTTGCGGCAACCGTGCTCCTGAGCCCGGGCGCTCT CCCGGGAACGGCCTCTGCGACCGAGGGAGGCGGCGGGGCATACCCGAACGGCGCCGAGGACTTCATGACCGGGGCGCTAC CGCCGCCGGGGACCTATTTTAAAAACTACCTGACCTACTACACGGCATCGGATTTCAAGGACGGCAACGGCAACGATCTC ATTCCCGATTTCGATCTGAAGGTGACGGCCGATGTGCTCCGGTTCATCCATGTGACAAACTGCAAGATCCTTGGCGCCAA CTGGGCCGTTCATGCCTTTATTCCCCTGACCTATCAGGACGTGAAAAGCGGCGGCGACAGCGATGATCGTTTCGGGTTGG GAGACATCATCGTAAACCCGATCATTCTCGGCTGGCACACCAAAAACTTTCACGTCACGGCGGGTCTCGACATCTATATC CCCGTGGGTACCTACGACGAGGACCGTCTGGCAAATCTCGGGAGGAATTACTGGACCTTCGAGCCCGTCCTTGCCATGAC CTACCTGAACGACAGCGGCTTCGAGGTCTCCGCCAAATTGATGTACGATTTCAACACGGAAAACGACGACACGAATTACG AGTCCGGCCAGGAATTCCACACCGACTTGACTATCGGCTATCACATCAACAAGTCGTGGGCCGTCGGCATCGGGGGCTAT TACTATGATCAGACGACTGATGATGAGCAGGACGGGGTCAAAGTCGGATCAGACGGATTCGAGGGCCGAGTCTTCTCCAT CGGTCCCGTGGCGCAGTACAGTTACAGGAACATGAGCTTCACGCTCAAGTGGCAGTCCGAATTCGAGGCAAGGAACAAGC CTGAGGGCGACAAGTTCTGGTTCAACCTCGTTTATGCCTTCTAA
Upstream 100 bases:
>100_bases GGCCTGATCCGCTTTTCTCATCGCAGATGACGGCTGACGTCGATATGGGAGACTCGTTCAGCAGTCGAAAAAGCCAATAA TTCAAGAAGGAGGATATAGT
Downstream 100 bases:
>100_bases CGCTTCAAAGGCCGCATTTTCCCGGGCGGCCTTTTTTTCAAAAACTTGAAATGAGCCGGCATTCTTATCTGCAGACTCCG CAGTTTTCTACCAGTAATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MKKKWPVFSKLFIMVVAATVLLSPGALPGTASATEGGGGAYPNGAEDFMTGALPPPGTYFKNYLTYYTASDFKDGNGNDL IPDFDLKVTADVLRFIHVTNCKILGANWAVHAFIPLTYQDVKSGGDSDDRFGLGDIIVNPIILGWHTKNFHVTAGLDIYI PVGTYDEDRLANLGRNYWTFEPVLAMTYLNDSGFEVSAKLMYDFNTENDDTNYESGQEFHTDLTIGYHINKSWAVGIGGY YYDQTTDDEQDGVKVGSDGFEGRVFSIGPVAQYSYRNMSFTLKWQSEFEARNKPEGDKFWFNLVYAF
Sequences:
>Translated_307_residues MKKKWPVFSKLFIMVVAATVLLSPGALPGTASATEGGGGAYPNGAEDFMTGALPPPGTYFKNYLTYYTASDFKDGNGNDL IPDFDLKVTADVLRFIHVTNCKILGANWAVHAFIPLTYQDVKSGGDSDDRFGLGDIIVNPIILGWHTKNFHVTAGLDIYI PVGTYDEDRLANLGRNYWTFEPVLAMTYLNDSGFEVSAKLMYDFNTENDDTNYESGQEFHTDLTIGYHINKSWAVGIGGY YYDQTTDDEQDGVKVGSDGFEGRVFSIGPVAQYSYRNMSFTLKWQSEFEARNKPEGDKFWFNLVYAF >Mature_307_residues MKKKWPVFSKLFIMVVAATVLLSPGALPGTASATEGGGGAYPNGAEDFMTGALPPPGTYFKNYLTYYTASDFKDGNGNDL IPDFDLKVTADVLRFIHVTNCKILGANWAVHAFIPLTYQDVKSGGDSDDRFGLGDIIVNPIILGWHTKNFHVTAGLDIYI PVGTYDEDRLANLGRNYWTFEPVLAMTYLNDSGFEVSAKLMYDFNTENDDTNYESGQEFHTDLTIGYHINKSWAVGIGGY YYDQTTDDEQDGVKVGSDGFEGRVFSIGPVAQYSYRNMSFTLKWQSEFEARNKPEGDKFWFNLVYAF
Specific function: Unknown
COG id: COG4313
COG function: function code C; Protein involved in meta-pathway of phenol degradation
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34241; Mature: 34241
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKWPVFSKLFIMVVAATVLLSPGALPGTASATEGGGGAYPNGAEDFMTGALPPPGTYF CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHH KNYLTYYTASDFKDGNGNDLIPDFDLKVTADVLRFIHVTNCKILGANWAVHAFIPLTYQD HHHEEEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCEEEEECCEEEEEEEEEEHHH VKSGGDSDDRFGLGDIIVNPIILGWHTKNFHVTAGLDIYIPVGTYDEDRLANLGRNYWTF HHCCCCCCCCCCCHHHEECCEEEEEECCCEEEEECEEEEEECCCCCHHHHHHCCCCCEEE EPVLAMTYLNDSGFEVSAKLMYDFNTENDDTNYESGQEFHTDLTIGYHINKSWAVGIGGY CCEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCEEEEECCEE YYDQTTDDEQDGVKVGSDGFEGRVFSIGPVAQYSYRNMSFTLKWQSEFEARNKPEGDKFW ECCCCCCCCCCCEEECCCCCCCEEEEECCCCEEEECCEEEEEEECCCCCCCCCCCCCEEE FNLVYAF EEEEEEC >Mature Secondary Structure MKKKWPVFSKLFIMVVAATVLLSPGALPGTASATEGGGGAYPNGAEDFMTGALPPPGTYF CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHH KNYLTYYTASDFKDGNGNDLIPDFDLKVTADVLRFIHVTNCKILGANWAVHAFIPLTYQD HHHEEEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCEEEEECCEEEEEEEEEEHHH VKSGGDSDDRFGLGDIIVNPIILGWHTKNFHVTAGLDIYIPVGTYDEDRLANLGRNYWTF HHCCCCCCCCCCCHHHEECCEEEEEECCCEEEEECEEEEEECCCCCHHHHHHCCCCCEEE EPVLAMTYLNDSGFEVSAKLMYDFNTENDDTNYESGQEFHTDLTIGYHINKSWAVGIGGY CCEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCEEEEECCEE YYDQTTDDEQDGVKVGSDGFEGRVFSIGPVAQYSYRNMSFTLKWQSEFEARNKPEGDKFW ECCCCCCCCCCCEEECCCCCCCEEEEECCCCEEEECCEEEEEEECCCCCCCCCCCCCEEE FNLVYAF EEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA