Click here to switch to the map view.

The map label for this gene is yjbJ [H]

Identifier: 85859215

GI number: 85859215

Start: 1394146

End: 1394952

Strand: Direct

Name: yjbJ [H]

Synonym: SYN_02800

Alternate gene names: 85859215

Gene position: 1394146-1394952 (Clockwise)

Preceding gene: 85859214

Following gene: 85859220

Centisome position: 43.85

GC content: 40.89

Gene sequence:

>807_bases
ATGTCGATTATATCTTCTAAAACTGTCTCTTTTAAAAAATACCCCTATCCGTTTGAACTTCAAACAGCGTCTGGCCGATT
AAATCAAAAAAATATTAAAGATTCTCGCTTCGGCGGGATATTGAAGGAAACCATGAGGTCTGGAAATACAAGACCGGTAT
CTACAGGAGATAGTGTTTCTTCTTCAGATCAAAAAAGGATGGAAATCCTGCTTCAACGTGTTGAGATCAGGATGGATGAA
CATCTGCTGAACATGATATCGGAGAATCCGGAAACAAGTAAAAATATAATCGAATGGACGTTTGACATATTTTCCGGATA
TTCTTCAATCCTCGCCACAGATGAAGACGTGTCAATATCTCTGCATAATGAACAAATAAGTGACGCTCAATTTAATAAAA
ATGATTACGATGCCGTCATTAAGAAGGCATCTGGCATATATAATGTGAATCCTGACTTGATAAGAAGTGTCATTGAAGCT
GAGAGCAATTTTAATTCAAACTGCACATCATCAAAAGGCGCCATGGGTTTGATGCAGTTGATGCCTGAGACAGCAAATGA
TCTGGGAGTCAGAAATGCCTATGATCCAGAGGAAAACATCATGGCGGGCACACGCTATCTCAAGGGACTGCTGGACCGTT
ACCATGGGAATGTACGATTGGCGCTGGCAGCCTATAACTGGGGGATGGGCAACCTGGAGAAATGTCCCGGAAAAATGCCC
CTGGAAACAAGAAATTATGTCGAAAGAGTGACTGCAAGCTATTTAAGTGAAGAGGAACCAAAGAGAAGCAGCTTAATGAT
GATCTAA

Upstream 100 bases:

>100_bases
CGTGTGGTGACTCCAGTTGTTTTTACTCAAGTTGAATTCCTACTCATATTTTTGTGAGGCCATTAATGAGCTCGAAATGA
AATGATAAGTAATTTCAGAA

Downstream 100 bases:

>100_bases
TGTTCTGCTGAAGTTTCCGACTGCCATCTTGCCAGGGATTCGAGAGCGCGATGGGCATACCTTTCTCCCCGCTCTCTTTT
TTTTACTTTTCCAGGTAGGG

Product: lytic transglycosylase

Products: N-Acetylmuramic Acid Residues; N-Acetylglucosamine Residues [C]

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MSIISSKTVSFKKYPYPFELQTASGRLNQKNIKDSRFGGILKETMRSGNTRPVSTGDSVSSSDQKRMEILLQRVEIRMDE
HLLNMISENPETSKNIIEWTFDIFSGYSSILATDEDVSISLHNEQISDAQFNKNDYDAVIKKASGIYNVNPDLIRSVIEA
ESNFNSNCTSSKGAMGLMQLMPETANDLGVRNAYDPEENIMAGTRYLKGLLDRYHGNVRLALAAYNWGMGNLEKCPGKMP
LETRNYVERVTASYLSEEEPKRSSLMMI

Sequences:

>Translated_268_residues
MSIISSKTVSFKKYPYPFELQTASGRLNQKNIKDSRFGGILKETMRSGNTRPVSTGDSVSSSDQKRMEILLQRVEIRMDE
HLLNMISENPETSKNIIEWTFDIFSGYSSILATDEDVSISLHNEQISDAQFNKNDYDAVIKKASGIYNVNPDLIRSVIEA
ESNFNSNCTSSKGAMGLMQLMPETANDLGVRNAYDPEENIMAGTRYLKGLLDRYHGNVRLALAAYNWGMGNLEKCPGKMP
LETRNYVERVTASYLSEEEPKRSSLMMI
>Mature_267_residues
SIISSKTVSFKKYPYPFELQTASGRLNQKNIKDSRFGGILKETMRSGNTRPVSTGDSVSSSDQKRMEILLQRVEIRMDEH
LLNMISENPETSKNIIEWTFDIFSGYSSILATDEDVSISLHNEQISDAQFNKNDYDAVIKKASGIYNVNPDLIRSVIEAE
SNFNSNCTSSKGAMGLMQLMPETANDLGVRNAYDPEENIMAGTRYLKGLLDRYHGNVRLALAAYNWGMGNLEKCPGKMPL
ETRNYVERVTASYLSEEEPKRSSLMMI

Specific function: Murein-Degrading Enzyme. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division (By Similarity). [C]

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 30184; Mature: 30052

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIISSKTVSFKKYPYPFELQTASGRLNQKNIKDSRFGGILKETMRSGNTRPVSTGDSVS
CCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
SSDQKRMEILLQRVEIRMDEHLLNMISENPETSKNIIEWTFDIFSGYSSILATDEDVSIS
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE
LHNEQISDAQFNKNDYDAVIKKASGIYNVNPDLIRSVIEAESNFNSNCTSSKGAMGLMQL
ECCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
MPETANDLGVRNAYDPEENIMAGTRYLKGLLDRYHGNVRLALAAYNWGMGNLEKCPGKMP
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHCCCCCC
LETRNYVERVTASYLSEEEPKRSSLMMI
CHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SIISSKTVSFKKYPYPFELQTASGRLNQKNIKDSRFGGILKETMRSGNTRPVSTGDSVS
CCCCCCCCCEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
SSDQKRMEILLQRVEIRMDEHLLNMISENPETSKNIIEWTFDIFSGYSSILATDEDVSIS
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE
LHNEQISDAQFNKNDYDAVIKKASGIYNVNPDLIRSVIEAESNFNSNCTSSKGAMGLMQL
ECCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
MPETANDLGVRNAYDPEENIMAGTRYLKGLLDRYHGNVRLALAAYNWGMGNLEKCPGKMP
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHCCCCCC
LETRNYVERVTASYLSEEEPKRSSLMMI
CHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]