Click here to switch to the map view.

The map label for this gene is ydiF [H]

Identifier: 85858288

GI number: 85858288

Start: 454490

End: 456085

Strand: Direct

Name: ydiF [H]

Synonym: SYN_02597

Alternate gene names: 85858288

Gene position: 454490-456085 (Clockwise)

Preceding gene: 85858287

Following gene: 85858289

Centisome position: 14.3

GC content: 54.2

Gene sequence:

>1596_bases
TTGAATTTAAAGGAGAAAGGAAAGATGTCCAAAGTAATCAGTGCAGAAAAGGCGGCGGAGCTGATCAAAGACGGAACGAC
GGTAGCATGGACCACGTCGGTCTTGTCCGGTTTTGCCGAAGAGATGGCAATAGCCATCGAAAAACGTTTCCTGGAAACGG
GAGCCCCGCGCGATCTCACCATCACGTTCAGTAGCGGCAACGGGGATTATCCCTACGGAGATGTCAAAGGAATGAACCAC
CTAGCCCACGAGGGCCTGATCAAAAAAGTAATCGGCAGTCATATCGGCCAGTCTCCCCGCCTGGGCAAACTGGTGACCGA
AAATAAAGTTGAATGCCATCTATTCACCCAGGGTATCCTGGTCCATCTCTATCGGCAGATGGCCGGCAAGAAAGTGGGGG
TGATCACTAAAACGGGGCTGGGCACCTTCATCGACCCCCGCTTGGACGGCGGCAGAATAAACGAGATCACGAAGGAAGAA
CGCGTAAAGCTGATCGAATTCGAAGGAGAAGAATACCTCTACTTCAAACCCTTTCCCATTGATGTGGCCATCATTCGCGG
ATCCGTTTGTGACGAAAAAGGCAACATGGCGATGACTCACGAGCCGCTGCTCCTCGAATCACTGTCTCTGGCCAGCGCCG
TCCACAACCGCGGCGGCATCGTCATTGCACAGGTACTGTACCTTGCCAAAACAGGCACCCTGCATCCCCGGAGAGTGAAT
GTGCCGGGCGGGCTCGTGGATTATATCGTCCAAGCAAAGCCGGAAAATCATCTCATGACCACAGGCACTTTCTTCGAGCC
CGATCTTTGCGGCTACTTCCATACCCCCATGGGCTCTATTCCCCCCCTGCCTCTTGATCAACGTAAGGTTATCGTGCGCC
GCGCGGCCATGGAAATGTTGCCCGATTCTATCCTCAACCTCGGCTTCGGCACGCCCACGTACGTAGCCAGCGTGGCCGTC
GAGGAAGGTGTCCTCGAAAAGGTGACCCTTACTACCGAGTTGGGCAACTTTGGCGGCGTTCCGTGCAGTGGCCTTGATTT
TCCCGCAAGCCACAACGCGGAATGTACCGTTGCCCATGAGGCCATGTTCGACTTTTACGACGGAGGCGGCCTCGACACCG
CCATCCTGGGCTTTGCCCAGGCCGATGCTGACGGGAACCTCAACGTCAGCAAGTTCGGCGGCCGGATATCCGGACCGGGC
GGCTTCATCAACATCGCGGACTCCGCCAAGAAAGTCGTCTTCGTCTCCCCCATGACCATCGACGCGAAGACTGCGGTGAA
GGATGGCAAACTCGTAATCCTCAAGGAAGGCAAAGGGAAAAAGTTCGTAAATCAAGTCGAACAGGTATCTTTCAGCGGCA
CATACGCCCGGAAAAAAGGCAAGCCGATCTTTTTTGTCACGGAACGAGCTGTCTTTTCCCTGGAAAATGAAGGGCTGACG
CTGATCGAAATTGCCCCGGGTCTCGAGGTGGAAAGAGATGTCCTATCCGCTATGGAGTTTAGACCCAGGATTTCTCCGGC
ATTAAAGGAAATGCCACGGGAATTGTTTATGCCACAGTGGGGAAAACTCCGACAAATCATGGAAGAAAACAGGTAG

Upstream 100 bases:

>100_bases
CCAGTCAGGTCAATATAGAGGAAAAGGCGATCACGAAGCGGGAAACCGTCATCTGAGGAGAATCATAGGGATGATGACAC
CAAAGTGATCTTTCTTAAAT

Downstream 100 bases:

>100_bases
AGGCCAACAGTCCGAAACATCATAACGGGGGTTAGCTGATCATTTAAGCCCCCATTATGGACCACTAATGTCCGGAGATA
CGGTCATTTTTTTGAGGAAG

Product: propionate CoA-transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MNLKEKGKMSKVISAEKAAELIKDGTTVAWTTSVLSGFAEEMAIAIEKRFLETGAPRDLTITFSSGNGDYPYGDVKGMNH
LAHEGLIKKVIGSHIGQSPRLGKLVTENKVECHLFTQGILVHLYRQMAGKKVGVITKTGLGTFIDPRLDGGRINEITKEE
RVKLIEFEGEEYLYFKPFPIDVAIIRGSVCDEKGNMAMTHEPLLLESLSLASAVHNRGGIVIAQVLYLAKTGTLHPRRVN
VPGGLVDYIVQAKPENHLMTTGTFFEPDLCGYFHTPMGSIPPLPLDQRKVIVRRAAMEMLPDSILNLGFGTPTYVASVAV
EEGVLEKVTLTTELGNFGGVPCSGLDFPASHNAECTVAHEAMFDFYDGGGLDTAILGFAQADADGNLNVSKFGGRISGPG
GFINIADSAKKVVFVSPMTIDAKTAVKDGKLVILKEGKGKKFVNQVEQVSFSGTYARKKGKPIFFVTERAVFSLENEGLT
LIEIAPGLEVERDVLSAMEFRPRISPALKEMPRELFMPQWGKLRQIMEENR

Sequences:

>Translated_531_residues
MNLKEKGKMSKVISAEKAAELIKDGTTVAWTTSVLSGFAEEMAIAIEKRFLETGAPRDLTITFSSGNGDYPYGDVKGMNH
LAHEGLIKKVIGSHIGQSPRLGKLVTENKVECHLFTQGILVHLYRQMAGKKVGVITKTGLGTFIDPRLDGGRINEITKEE
RVKLIEFEGEEYLYFKPFPIDVAIIRGSVCDEKGNMAMTHEPLLLESLSLASAVHNRGGIVIAQVLYLAKTGTLHPRRVN
VPGGLVDYIVQAKPENHLMTTGTFFEPDLCGYFHTPMGSIPPLPLDQRKVIVRRAAMEMLPDSILNLGFGTPTYVASVAV
EEGVLEKVTLTTELGNFGGVPCSGLDFPASHNAECTVAHEAMFDFYDGGGLDTAILGFAQADADGNLNVSKFGGRISGPG
GFINIADSAKKVVFVSPMTIDAKTAVKDGKLVILKEGKGKKFVNQVEQVSFSGTYARKKGKPIFFVTERAVFSLENEGLT
LIEIAPGLEVERDVLSAMEFRPRISPALKEMPRELFMPQWGKLRQIMEENR
>Mature_531_residues
MNLKEKGKMSKVISAEKAAELIKDGTTVAWTTSVLSGFAEEMAIAIEKRFLETGAPRDLTITFSSGNGDYPYGDVKGMNH
LAHEGLIKKVIGSHIGQSPRLGKLVTENKVECHLFTQGILVHLYRQMAGKKVGVITKTGLGTFIDPRLDGGRINEITKEE
RVKLIEFEGEEYLYFKPFPIDVAIIRGSVCDEKGNMAMTHEPLLLESLSLASAVHNRGGIVIAQVLYLAKTGTLHPRRVN
VPGGLVDYIVQAKPENHLMTTGTFFEPDLCGYFHTPMGSIPPLPLDQRKVIVRRAAMEMLPDSILNLGFGTPTYVASVAV
EEGVLEKVTLTTELGNFGGVPCSGLDFPASHNAECTVAHEAMFDFYDGGGLDTAILGFAQADADGNLNVSKFGGRISGPG
GFINIADSAKKVVFVSPMTIDAKTAVKDGKLVILKEGKGKKFVNQVEQVSFSGTYARKKGKPIFFVTERAVFSLENEGLT
LIEIAPGLEVERDVLSAMEFRPRISPALKEMPRELFMPQWGKLRQIMEENR

Specific function: Unknown

COG id: COG4670

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae AtoD [H]

Homologues:

Organism=Escherichia coli, GI1787985, Length=510, Percent_Identity=40.5882352941176, Blast_Score=392, Evalue=1e-110,
Organism=Escherichia coli, GI1788551, Length=248, Percent_Identity=27.0161290322581, Blast_Score=82, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17531517, Length=527, Percent_Identity=23.3396584440228, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21358325, Length=520, Percent_Identity=25.1923076923077, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24655794, Length=520, Percent_Identity=25, Blast_Score=91, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014388
- InterPro:   IPR004165 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: NA

Molecular weight: Translated: 57949; Mature: 57949

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKEKGKMSKVISAEKAAELIKDGTTVAWTTSVLSGFAEEMAIAIEKRFLETGAPRDLT
CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
ITFSSGNGDYPYGDVKGMNHLAHEGLIKKVIGSHIGQSPRLGKLVTENKVECHLFTQGIL
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCEEEEEHHHHH
VHLYRQMAGKKVGVITKTGLGTFIDPRLDGGRINEITKEERVKLIEFEGEEYLYFKPFPI
HHHHHHHHCCEEEEEEECCCCCEECCCCCCCCCCCCCHHHCEEEEEECCCEEEEEECCCE
DVAIIRGSVCDEKGNMAMTHEPLLLESLSLASAVHNRGGIVIAQVLYLAKTGTLHPRRVN
EEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEC
VPGGLVDYIVQAKPENHLMTTGTFFEPDLCGYFHTPMGSIPPLPLDQRKVIVRRAAMEML
CCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
PDSILNLGFGTPTYVASVAVEEGVLEKVTLTTELGNFGGVPCSGLDFPASHNAECTVAHE
CHHHHHCCCCCHHHHHHHHHHCCCHHEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHH
AMFDFYDGGGLDTAILGFAQADADGNLNVSKFGGRISGPGGFINIADSAKKVVFVSPMTI
HHHHHCCCCCCCHHHHEEEECCCCCCEEHHHCCCEECCCCCEEEECCCCCEEEEECCEEE
DAKTAVKDGKLVILKEGKGKKFVNQVEQVSFSGTYARKKGKPIFFVTERAVFSLENEGLT
CHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCHHCCCCEEEEEECCEEEEECCCCEE
LIEIAPGLEVERDVLSAMEFRPRISPALKEMPRELFMPQWGKLRQIMEENR
EEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MNLKEKGKMSKVISAEKAAELIKDGTTVAWTTSVLSGFAEEMAIAIEKRFLETGAPRDLT
CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
ITFSSGNGDYPYGDVKGMNHLAHEGLIKKVIGSHIGQSPRLGKLVTENKVECHLFTQGIL
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCEEEEEHHHHH
VHLYRQMAGKKVGVITKTGLGTFIDPRLDGGRINEITKEERVKLIEFEGEEYLYFKPFPI
HHHHHHHHCCEEEEEEECCCCCEECCCCCCCCCCCCCHHHCEEEEEECCCEEEEEECCCE
DVAIIRGSVCDEKGNMAMTHEPLLLESLSLASAVHNRGGIVIAQVLYLAKTGTLHPRRVN
EEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEC
VPGGLVDYIVQAKPENHLMTTGTFFEPDLCGYFHTPMGSIPPLPLDQRKVIVRRAAMEML
CCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
PDSILNLGFGTPTYVASVAVEEGVLEKVTLTTELGNFGGVPCSGLDFPASHNAECTVAHE
CHHHHHCCCCCHHHHHHHHHHCCCHHEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHH
AMFDFYDGGGLDTAILGFAQADADGNLNVSKFGGRISGPGGFINIADSAKKVVFVSPMTI
HHHHHCCCCCCCHHHHEEEECCCCCCEEHHHCCCEECCCCCEEEECCCCCEEEEECCEEE
DAKTAVKDGKLVILKEGKGKKFVNQVEQVSFSGTYARKKGKPIFFVTERAVFSLENEGLT
CHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCHHCCCCEEEEEECCEEEEECCCCEE
LIEIAPGLEVERDVLSAMEFRPRISPALKEMPRELFMPQWGKLRQIMEENR
EEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 3541912; 7984428 [H]