| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is speB2 [H]
Identifier: 85858225
GI number: 85858225
Start: 378267
End: 379340
Strand: Direct
Name: speB2 [H]
Synonym: SYN_01147
Alternate gene names: 85858225
Gene position: 378267-379340 (Clockwise)
Preceding gene: 85858224
Following gene: 85858226
Centisome position: 11.9
GC content: 55.03
Gene sequence:
>1074_bases GTGGCAAATGCCGGGGCTTCGGTTTGCTGGACTGTTGTCGCCGATGAACTGAATCGAATAAGGGGGATATCCATGAATCG CAAGAACGTTCCGATGGTCGCGAACAGAAAAGGCTCTTTGCCACGAGTCTATGGAGATACGCCTTCGTTCCTGGGGGTCG ATGTCGTTGACATCAATCGCCTTGAGAAGGGCAGGGACGTGATCTTCTCCGGGGTGCCCTGGGAAGGAACGGTGACCTGG GGGTCTTTTTCGGGCTGCGAGCTCGCGCCGCGGGCAATCCGGCACAGCGCGGCGCGATACGGCGGATTTCTGCCGGAATA CGAGCTGGATTTCTTTGACTATCTGACTGTCGCAGATGCCGGGGATGTGTCCGTTGATCCGAACAGTCCGGAAAAAACGA TGAACAACATCTATTCTTCCATGGACAGGATTTACGGGAAGGGAAGCATTCCAGTCACGGTAGGCGGCGATCATTCCATT ACCCCGCCCATTGTGGATGCCCTAGGCAACAACGCGAAGGGCCCTATCGGCATTCTTCATTTCGACGCTCATCTGGACAA CGCGAAGGTTTTCGGTGAAGATCTGTTCGCCCGCTGCAGTCCCCTGCATCGCATCGCCCAGAATGAAAAAGTGAGAACGG AAAGCATCGTTCATATCGGCATTCGGGGGCCGAGAAATTCTCCCTCCCAGTTGGAGTATGCCTGGCAGATAGGGGCGAGA GTCTTCAACATCCGGGAGATCAGAGAAAGAGGCATGACTTCGGTCATCGACGAAGCGCTCAGGATCGCGTCAAACCAGAC TGAACATGTGTATGTGACAATTTGCAGCGACTGCATTGACGCGTCCTTCAATCCCGGAGGCCCAGCGGATTTCAACGGCC TGTTTCCTCACGAATTGTTCTCGGCTCTCTACACGATCGGAAGGGCGGGGATATCCGGTTTGGACTACGTGGAAGTCTAT CCGATTCAGGACCCGAATTCGTTTTCTTCTCACCTGGCTTCCTGGGCGATCATCCATGCCCTCGTGGGGCTGGCCTCGGG AAAGAAAAAAAAGAGCGAAACGGCAACGGCCTGA
Upstream 100 bases:
>100_bases AGTCAGCCGCTGTTTTCTTTACCCAGGCAGTCTGCGATTACTGCTCCGGCAGCTGAACCTGTAGGCTCCCGCGAGGGAGT TTTTCCGTATTCTGTCGGCT
Downstream 100 bases:
>100_bases CGCGGTCGGTTTCCCAGGGGAGGCGGGTTCTGCGGTTCCGTCCGCCTCAGGACGAGAAGGTTCAAACGACATCTGAAAGT TGCGTGTTGCAGGGATTATT
Product: arginase
Products: NA
Alternate protein names: Agmatine ureohydrolase 2; AUH 2 [H]
Number of amino acids: Translated: 357; Mature: 356
Protein sequence:
>357_residues MANAGASVCWTVVADELNRIRGISMNRKNVPMVANRKGSLPRVYGDTPSFLGVDVVDINRLEKGRDVIFSGVPWEGTVTW GSFSGCELAPRAIRHSAARYGGFLPEYELDFFDYLTVADAGDVSVDPNSPEKTMNNIYSSMDRIYGKGSIPVTVGGDHSI TPPIVDALGNNAKGPIGILHFDAHLDNAKVFGEDLFARCSPLHRIAQNEKVRTESIVHIGIRGPRNSPSQLEYAWQIGAR VFNIREIRERGMTSVIDEALRIASNQTEHVYVTICSDCIDASFNPGGPADFNGLFPHELFSALYTIGRAGISGLDYVEVY PIQDPNSFSSHLASWAIIHALVGLASGKKKKSETATA
Sequences:
>Translated_357_residues MANAGASVCWTVVADELNRIRGISMNRKNVPMVANRKGSLPRVYGDTPSFLGVDVVDINRLEKGRDVIFSGVPWEGTVTW GSFSGCELAPRAIRHSAARYGGFLPEYELDFFDYLTVADAGDVSVDPNSPEKTMNNIYSSMDRIYGKGSIPVTVGGDHSI TPPIVDALGNNAKGPIGILHFDAHLDNAKVFGEDLFARCSPLHRIAQNEKVRTESIVHIGIRGPRNSPSQLEYAWQIGAR VFNIREIRERGMTSVIDEALRIASNQTEHVYVTICSDCIDASFNPGGPADFNGLFPHELFSALYTIGRAGISGLDYVEVY PIQDPNSFSSHLASWAIIHALVGLASGKKKKSETATA >Mature_356_residues ANAGASVCWTVVADELNRIRGISMNRKNVPMVANRKGSLPRVYGDTPSFLGVDVVDINRLEKGRDVIFSGVPWEGTVTWG SFSGCELAPRAIRHSAARYGGFLPEYELDFFDYLTVADAGDVSVDPNSPEKTMNNIYSSMDRIYGKGSIPVTVGGDHSIT PPIVDALGNNAKGPIGILHFDAHLDNAKVFGEDLFARCSPLHRIAQNEKVRTESIVHIGIRGPRNSPSQLEYAWQIGARV FNIREIRERGMTSVIDEALRIASNQTEHVYVTICSDCIDASFNPGGPADFNGLFPHELFSALYTIGRAGISGLDYVEVYP IQDPNSFSSHLASWAIIHALVGLASGKKKKSETATA
Specific function: Catalyzes The Formation Of Putrescine From Agmatine. [C]
COG id: COG0010
COG function: function code E; Arginase/agmatinase/formimionoglutamate hydrolase, arginase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the arginase family. Agmatinase subfamily [H]
Homologues:
Organism=Homo sapiens, GI37537722, Length=313, Percent_Identity=29.073482428115, Blast_Score=122, Evalue=7e-28, Organism=Escherichia coli, GI1789306, Length=263, Percent_Identity=25.4752851711027, Blast_Score=70, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006035 - InterPro: IPR020855 [H]
Pfam domain/function: PF00491 Arginase [H]
EC number: =3.5.3.11 [H]
Molecular weight: Translated: 38856; Mature: 38725
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS00147 ARGINASE_1 ; PS00148 ARGINASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANAGASVCWTVVADELNRIRGISMNRKNVPMVANRKGSLPRVYGDTPSFLGVDVVDINR CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEECCCCCCCCEEEEEHHH LEKGRDVIFSGVPWEGTVTWGSFSGCELAPRAIRHSAARYGGFLPEYELDFFDYLTVADA HCCCCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEECC GDVSVDPNSPEKTMNNIYSSMDRIYGKGSIPVTVGGDHSITPPIVDALGNNAKGPIGILH CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCCCCCEEEEE FDAHLDNAKVFGEDLFARCSPLHRIAQNEKVRTESIVHIGIRGPRNSPSQLEYAWQIGAR EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH VFNIREIRERGMTSVIDEALRIASNQTEHVYVTICSDCIDASFNPGGPADFNGLFPHELF HHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHH SALYTIGRAGISGLDYVEVYPIQDPNSFSSHLASWAIIHALVGLASGKKKKSETATA HHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure ANAGASVCWTVVADELNRIRGISMNRKNVPMVANRKGSLPRVYGDTPSFLGVDVVDINR CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEECCCCCCCCEEEEEHHH LEKGRDVIFSGVPWEGTVTWGSFSGCELAPRAIRHSAARYGGFLPEYELDFFDYLTVADA HCCCCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEECC GDVSVDPNSPEKTMNNIYSSMDRIYGKGSIPVTVGGDHSITPPIVDALGNNAKGPIGILH CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCCCCCEEEEE FDAHLDNAKVFGEDLFARCSPLHRIAQNEKVRTESIVHIGIRGPRNSPSQLEYAWQIGAR EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH VFNIREIRERGMTSVIDEALRIASNQTEHVYVTICSDCIDASFNPGGPADFNGLFPHELF HHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHH SALYTIGRAGISGLDYVEVYPIQDPNSFSSHLASWAIIHALVGLASGKKKKSETATA HHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]