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The map label for this gene is yngJ [H]

Identifier: 85374972

GI number: 85374972

Start: 2174180

End: 2175325

Strand: Direct

Name: yngJ [H]

Synonym: ELI_10725

Alternate gene names: 85374972

Gene position: 2174180-2175325 (Clockwise)

Preceding gene: 85374971

Following gene: 85374973

Centisome position: 71.23

GC content: 58.9

Gene sequence:

>1146_bases
ATGAACTTTGAGCTGTCCGATGAACAACGCATGGCGGTGGAAACCGTCCGCCGCTTTCTCGACAACAAGCTTGAGCCGGA
AATCCGCCGGCATGGGGAGCGATTCATCCCCAAACCGCTCATGAAGGAATGGACTCAAGCACTGACCGGCTATGGCCATA
TTACCGCACCGCATCAGGAGCAATGGGGCGGGCTTGATATGGGATGGCTCACTCATCTGCTCATTTTCGAGGAGATCGCC
TATTCCTCGCTCGATGTGGCCATACCCGGCTTCATCAACGCGGTTGGCGCAGAACTCATCCGCCGCTTCGCCCCGGAGAC
GATCAAGCAACGCTATCTTGCCGACCTCGTCGCGGCCGAGAAGTTCGTTTCGCTCGGCATCTCGGAGCCCGATGTCGGCT
CGGACGTCGCCGCCATCAAGACACGCGCCGTACGAGACGGCGATTTCTGGGTCATCAATGGCGAAAAGACCTGGATCACC
AACGGAGCCTACTCGGACATCTTCATCTGTACGTGCAAGACTGGCGAAAATGAAGTCACTCACATCCTGGTCGATCGTGA
CGAGAGTGAGTATGAGGTGCGCGATATCCAGAAGATGGCGCTCAACGGCCAATCGACTGCACAGATATTCCTGACCGAAT
GCCGCGTACCGGTGGCAAACACGATCGGCCGGGTCGGCGATGGATTGCGCAATACGTTGCAAGTGTTCGAGATTGCCCGC
TGCCATATGGCGATGTGGAGTATCGGCATCGCACGGCGAGCAATGGATGAGGCGATCGCGTACGCTCGCGATCGCGCGCA
GCATGGCAAGAAGATCGCCGGCCATCAGCTGATCGCCGACAAGATCGCCATCATGGCGACCAAGATCGACGCAGCCCGTC
TGTTGACGCACCGGGCAATATCCCTCGTCCAGGCGGGCACGCGCGCAGAGACGGAATGCTCGATGGCCAAGTGGTACGCC
ACCGAAATGGCGATCGAAGCGACGCGCGATGCGCTTCAGATCCATGGCGGCAACGGCGTCACCCGCGAATTCATCGTCGA
GCGGCTGGTGCGTGAGGCGATCATTTGCCCCATCCCCGATGGCACGACGGAGATTCAAAAGCTTGTTGTTTCGCGCGCCC
TGACCGGCATTCAAGCCTTTCGGTAA

Upstream 100 bases:

>100_bases
AACGGCGGAGGTGTCATCGGGGTGGAAGAGGCGGTGGTCGCCGTCACGATCCTGGGCCGGTAGTTGTCAGAGCGCGCCTA
GGGAAACACGGGGTCACGAT

Downstream 100 bases:

>100_bases
GGCTCAGACGAAAACGACAGCGTCGACGGAAATGGAGCCGCGTGCCTGACTCGCACAGGATCAAATGCGCAGATGCGTCG
CTCAGGTAAAAGAGGCAGAC

Product: acyl-CoA dehydrogenase, short-chain specific

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MNFELSDEQRMAVETVRRFLDNKLEPEIRRHGERFIPKPLMKEWTQALTGYGHITAPHQEQWGGLDMGWLTHLLIFEEIA
YSSLDVAIPGFINAVGAELIRRFAPETIKQRYLADLVAAEKFVSLGISEPDVGSDVAAIKTRAVRDGDFWVINGEKTWIT
NGAYSDIFICTCKTGENEVTHILVDRDESEYEVRDIQKMALNGQSTAQIFLTECRVPVANTIGRVGDGLRNTLQVFEIAR
CHMAMWSIGIARRAMDEAIAYARDRAQHGKKIAGHQLIADKIAIMATKIDAARLLTHRAISLVQAGTRAETECSMAKWYA
TEMAIEATRDALQIHGGNGVTREFIVERLVREAIICPIPDGTTEIQKLVVSRALTGIQAFR

Sequences:

>Translated_381_residues
MNFELSDEQRMAVETVRRFLDNKLEPEIRRHGERFIPKPLMKEWTQALTGYGHITAPHQEQWGGLDMGWLTHLLIFEEIA
YSSLDVAIPGFINAVGAELIRRFAPETIKQRYLADLVAAEKFVSLGISEPDVGSDVAAIKTRAVRDGDFWVINGEKTWIT
NGAYSDIFICTCKTGENEVTHILVDRDESEYEVRDIQKMALNGQSTAQIFLTECRVPVANTIGRVGDGLRNTLQVFEIAR
CHMAMWSIGIARRAMDEAIAYARDRAQHGKKIAGHQLIADKIAIMATKIDAARLLTHRAISLVQAGTRAETECSMAKWYA
TEMAIEATRDALQIHGGNGVTREFIVERLVREAIICPIPDGTTEIQKLVVSRALTGIQAFR
>Mature_381_residues
MNFELSDEQRMAVETVRRFLDNKLEPEIRRHGERFIPKPLMKEWTQALTGYGHITAPHQEQWGGLDMGWLTHLLIFEEIA
YSSLDVAIPGFINAVGAELIRRFAPETIKQRYLADLVAAEKFVSLGISEPDVGSDVAAIKTRAVRDGDFWVINGEKTWIT
NGAYSDIFICTCKTGENEVTHILVDRDESEYEVRDIQKMALNGQSTAQIFLTECRVPVANTIGRVGDGLRNTLQVFEIAR
CHMAMWSIGIARRAMDEAIAYARDRAQHGKKIAGHQLIADKIAIMATKIDAARLLTHRAISLVQAGTRAETECSMAKWYA
TEMAIEATRDALQIHGGNGVTREFIVERLVREAIICPIPDGTTEIQKLVVSRALTGIQAFR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=384, Percent_Identity=30.9895833333333, Blast_Score=193, Evalue=2e-49,
Organism=Homo sapiens, GI4501859, Length=374, Percent_Identity=31.5508021390374, Blast_Score=190, Evalue=2e-48,
Organism=Homo sapiens, GI4557231, Length=386, Percent_Identity=33.160621761658, Blast_Score=187, Evalue=2e-47,
Organism=Homo sapiens, GI187960098, Length=386, Percent_Identity=33.160621761658, Blast_Score=186, Evalue=2e-47,
Organism=Homo sapiens, GI226958414, Length=331, Percent_Identity=30.2114803625378, Blast_Score=179, Evalue=5e-45,
Organism=Homo sapiens, GI4557233, Length=380, Percent_Identity=31.8421052631579, Blast_Score=175, Evalue=7e-44,
Organism=Homo sapiens, GI7656849, Length=376, Percent_Identity=28.7234042553192, Blast_Score=165, Evalue=8e-41,
Organism=Homo sapiens, GI21361497, Length=350, Percent_Identity=29.7142857142857, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI76496475, Length=386, Percent_Identity=28.2383419689119, Blast_Score=143, Evalue=2e-34,
Organism=Homo sapiens, GI4557235, Length=386, Percent_Identity=28.2383419689119, Blast_Score=143, Evalue=3e-34,
Organism=Homo sapiens, GI4501857, Length=380, Percent_Identity=25.7894736842105, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI4503943, Length=287, Percent_Identity=29.9651567944251, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI7669494, Length=252, Percent_Identity=28.1746031746032, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI48976061, Length=396, Percent_Identity=24.7474747474747, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI211971008, Length=396, Percent_Identity=24.7474747474747, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI38505218, Length=287, Percent_Identity=26.4808362369338, Blast_Score=80, Evalue=3e-15,
Organism=Escherichia coli, GI87081958, Length=382, Percent_Identity=27.7486910994764, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI1786223, Length=382, Percent_Identity=26.1780104712042, Blast_Score=132, Evalue=4e-32,
Organism=Caenorhabditis elegans, GI17534899, Length=385, Percent_Identity=32.7272727272727, Blast_Score=186, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI17570075, Length=382, Percent_Identity=29.8429319371728, Blast_Score=184, Evalue=5e-47,
Organism=Caenorhabditis elegans, GI17569725, Length=386, Percent_Identity=30.8290155440415, Blast_Score=181, Evalue=6e-46,
Organism=Caenorhabditis elegans, GI17538396, Length=383, Percent_Identity=28.9817232375979, Blast_Score=179, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI17508101, Length=373, Percent_Identity=31.0991957104558, Blast_Score=171, Evalue=4e-43,
Organism=Caenorhabditis elegans, GI17506239, Length=376, Percent_Identity=28.1914893617021, Blast_Score=165, Evalue=4e-41,
Organism=Caenorhabditis elegans, GI17533517, Length=378, Percent_Identity=27.5132275132275, Blast_Score=162, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI71985184, Length=393, Percent_Identity=24.9363867684478, Blast_Score=137, Evalue=8e-33,
Organism=Caenorhabditis elegans, GI17534353, Length=395, Percent_Identity=26.3291139240506, Blast_Score=125, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI71990804, Length=270, Percent_Identity=28.8888888888889, Blast_Score=117, Evalue=7e-27,
Organism=Caenorhabditis elegans, GI17505929, Length=278, Percent_Identity=28.4172661870504, Blast_Score=114, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI17551932, Length=328, Percent_Identity=25.609756097561, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71982178, Length=278, Percent_Identity=27.6978417266187, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI32563615, Length=225, Percent_Identity=28.4444444444444, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71985192, Length=322, Percent_Identity=22.360248447205, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17531909, Length=239, Percent_Identity=28.4518828451883, Blast_Score=98, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17562446, Length=259, Percent_Identity=27.4131274131274, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17531913, Length=168, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI86563383, Length=275, Percent_Identity=26.9090909090909, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI86563381, Length=275, Percent_Identity=26.9090909090909, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24660351, Length=385, Percent_Identity=32.2077922077922, Blast_Score=184, Evalue=1e-46,
Organism=Drosophila melanogaster, GI21355753, Length=382, Percent_Identity=29.5811518324607, Blast_Score=177, Evalue=1e-44,
Organism=Drosophila melanogaster, GI24666513, Length=380, Percent_Identity=30, Blast_Score=174, Evalue=1e-43,
Organism=Drosophila melanogaster, GI24646207, Length=376, Percent_Identity=30.8510638297872, Blast_Score=172, Evalue=2e-43,
Organism=Drosophila melanogaster, GI21356377, Length=380, Percent_Identity=30, Blast_Score=161, Evalue=5e-40,
Organism=Drosophila melanogaster, GI281363737, Length=332, Percent_Identity=28.0120481927711, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI19920834, Length=292, Percent_Identity=30.8219178082192, Blast_Score=117, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 42638; Mature: 42638

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFELSDEQRMAVETVRRFLDNKLEPEIRRHGERFIPKPLMKEWTQALTGYGHITAPHQE
CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHH
QWGGLDMGWLTHLLIFEEIAYSSLDVAIPGFINAVGAELIRRFAPETIKQRYLADLVAAE
HCCCCCHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
KFVSLGISEPDVGSDVAAIKTRAVRDGDFWVINGEKTWITNGAYSDIFICTCKTGENEVT
HHHHCCCCCCCCCCCHHHHHHHEEECCCEEEECCCEEEEECCCCCCEEEEEECCCCCCEE
HILVDRDESEYEVRDIQKMALNGQSTAQIFLTECRVPVANTIGRVGDGLRNTLQVFEIAR
EEEEECCCCHHHHHHHHHHHCCCCCHHEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
CHMAMWSIGIARRAMDEAIAYARDRAQHGKKIAGHQLIADKIAIMATKIDAARLLTHRAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLVQAGTRAETECSMAKWYATEMAIEATRDALQIHGGNGVTREFIVERLVREAIICPIPD
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHEECCCCC
GTTEIQKLVVSRALTGIQAFR
CHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNFELSDEQRMAVETVRRFLDNKLEPEIRRHGERFIPKPLMKEWTQALTGYGHITAPHQE
CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHH
QWGGLDMGWLTHLLIFEEIAYSSLDVAIPGFINAVGAELIRRFAPETIKQRYLADLVAAE
HCCCCCHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
KFVSLGISEPDVGSDVAAIKTRAVRDGDFWVINGEKTWITNGAYSDIFICTCKTGENEVT
HHHHCCCCCCCCCCCHHHHHHHEEECCCEEEECCCEEEEECCCCCCEEEEEECCCCCCEE
HILVDRDESEYEVRDIQKMALNGQSTAQIFLTECRVPVANTIGRVGDGLRNTLQVFEIAR
EEEEECCCCHHHHHHHHHHHCCCCCHHEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
CHMAMWSIGIARRAMDEAIAYARDRAQHGKKIAGHQLIADKIAIMATKIDAARLLTHRAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLVQAGTRAETECSMAKWYATEMAIEATRDALQIHGGNGVTREFIVERLVREAIICPIPD
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHEECCCCC
GTTEIQKLVVSRALTGIQAFR
CHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]