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The map label for this gene is rpoE [C]

Identifier: 85374897

GI number: 85374897

Start: 2100963

End: 2101493

Strand: Direct

Name: rpoE [C]

Synonym: ELI_10350

Alternate gene names: 85374897

Gene position: 2100963-2101493 (Clockwise)

Preceding gene: 85374896

Following gene: 85374898

Centisome position: 68.83

GC content: 61.21

Gene sequence:

>531_bases
ATGATTGCGGACGAGGCCACACTGGCGCAGCTGATGCGCCAATCACAGGGAGGCGACAAGCGCGCCTATACTGTGCTGCT
GGACGAAGCCGCCAATTGGCTGTCGCGCTATTATTCGCGCCGTGTGCCGCCGCATCAGCAGGACGATCTCGTCCAGGAAG
TGCTGATGGCGGTCCACAACAAGCGCGACACCTGGGATGCGAGCCGCGCATTCCTCCCCTGGCTGGCGGCGATCGCGCGC
TATCGGTGGGTCGACCATCTGCGCAAGGTCTACCGCACGGAAGCCGACCAGTTGGAAGACTGGGACGCGCCCGAGGAAAG
CAGCGAAGAAGCGGTGCTCGCACGGCTGAGCCTGGAGCGCCTCTTCGTCAAGCTGCCCGAAAAACAGGCGGAAGTCATCG
AGATGGTCAAGATCGAAGGTCTGAGCATCAAGGAAGCCTCCGCAAAATCCGGCCAGAGCGAGAGCCTGGTCAAAGTGAAC
ATCCATCGCGGGCTGAAGAAACTCGGCACCCTGATCGAAAAGGCAGAATGA

Upstream 100 bases:

>100_bases
CCCTGATGGCTAGGCGCTGACGAAAAATTCTGCCGCCATGTAACCGCCGGAGCCCTGGCCGCGAAAAGCCGTGCGACACC
TGCCAAGGGGAGCGAAGCAG

Downstream 100 bases:

>100_bases
AGATGAACCGGCCCAATGCTGCACTGATCGCAGAACTGACCGAAGACCTGCAGCCCGTGCGCGCCATGAAGGCGCGCGAC
GGTTTGCTGCTCGCCGCGCT

Product: hypothetical protein

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma-E Factor Protein; ECF-Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Q Factor; Extracytoplasmic Function AlteRNAtive Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor NccH; RNA Polymerase Sigma Subunit; ECF Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MIADEATLAQLMRQSQGGDKRAYTVLLDEAANWLSRYYSRRVPPHQQDDLVQEVLMAVHNKRDTWDASRAFLPWLAAIAR
YRWVDHLRKVYRTEADQLEDWDAPEESSEEAVLARLSLERLFVKLPEKQAEVIEMVKIEGLSIKEASAKSGQSESLVKVN
IHRGLKKLGTLIEKAE

Sequences:

>Translated_176_residues
MIADEATLAQLMRQSQGGDKRAYTVLLDEAANWLSRYYSRRVPPHQQDDLVQEVLMAVHNKRDTWDASRAFLPWLAAIAR
YRWVDHLRKVYRTEADQLEDWDAPEESSEEAVLARLSLERLFVKLPEKQAEVIEMVKIEGLSIKEASAKSGQSESLVKVN
IHRGLKKLGTLIEKAE
>Mature_176_residues
MIADEATLAQLMRQSQGGDKRAYTVLLDEAANWLSRYYSRRVPPHQQDDLVQEVLMAVHNKRDTWDASRAFLPWLAAIAR
YRWVDHLRKVYRTEADQLEDWDAPEESSEEAVLARLSLERLFVKLPEKQAEVIEMVKIEGLSIKEASAKSGQSESLVKVN
IHRGLKKLGTLIEKAE

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20200; Mature: 20200

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIADEATLAQLMRQSQGGDKRAYTVLLDEAANWLSRYYSRRVPPHQQDDLVQEVLMAVHN
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
KRDTWDASRAFLPWLAAIARYRWVDHLRKVYRTEADQLEDWDAPEESSEEAVLARLSLER
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
LFVKLPEKQAEVIEMVKIEGLSIKEASAKSGQSESLVKVNIHRGLKKLGTLIEKAE
HHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIADEATLAQLMRQSQGGDKRAYTVLLDEAANWLSRYYSRRVPPHQQDDLVQEVLMAVHN
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
KRDTWDASRAFLPWLAAIARYRWVDHLRKVYRTEADQLEDWDAPEESSEEAVLARLSLER
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
LFVKLPEKQAEVIEMVKIEGLSIKEASAKSGQSESLVKVNIHRGLKKLGTLIEKAE
HHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA