Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 85374857

GI number: 85374857

Start: 2062315

End: 2062764

Strand: Reverse

Name: radC [C]

Synonym: ELI_10150

Alternate gene names: 85374857

Gene position: 2062764-2062315 (Counterclockwise)

Preceding gene: 85374858

Following gene: 85374856

Centisome position: 67.58

GC content: 60.22

Gene sequence:

>450_bases
ATGGGTGTCGAGATACGCATTTGCGCGGAAGCCCTCGAGCGGGATGCTGTTGCCCGCGGGTTCGGGCGCATGCCGGCCGC
CTTGGCCGATCCGGGATTTCTTCAGTATATTCACAGCCGCTTCGCCATGGCGAACGAGGAACGCCTCCATGTCGTCTATT
GCGACGATCGGCAGCGATATCTGCATGACGAGACGCTGACGATCGGCGGTGAAAACTCGCTGGTGTTGCGGGCCCGTCCG
CTTGTGCACCGGGCGCTAACGATCGGTGCCGGCGGACTGATCCTCGCGCACAACCACTTGTCGGGTAATTGCCAACCGAG
CGAAAAGGACATCGTTGCGACGCACCGCCTGCAGAAACTGGGCGCAGAGCTCGAACTAACACTGATCGACCACATGATCT
TTACCCGAGATCGCTTCTTCAGCATGGCTGCGGGAGGCTTTCTCGACTGA

Upstream 100 bases:

>100_bases
TGTTCGTCCTCGCATTCGGACTGGGCAGGCACGCGTCGCGCGTAACAAGGATAGGCTCCTATCGCGACTGGCGCGTTCAG
CCGGGCATGAGGTATTCCTG

Downstream 100 bases:

>100_bases
GGAGGGTCGCACCTGTCCAGCCCCGACCTTTGACGGGGCTGGACAGGCCTCTTTCAATCGGCGACGATCCTGCCAACGAT
TTTGCAGGAGTCAAAGGATG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MGVEIRICAEALERDAVARGFGRMPAALADPGFLQYIHSRFAMANEERLHVVYCDDRQRYLHDETLTIGGENSLVLRARP
LVHRALTIGAGGLILAHNHLSGNCQPSEKDIVATHRLQKLGAELELTLIDHMIFTRDRFFSMAAGGFLD

Sequences:

>Translated_149_residues
MGVEIRICAEALERDAVARGFGRMPAALADPGFLQYIHSRFAMANEERLHVVYCDDRQRYLHDETLTIGGENSLVLRARP
LVHRALTIGAGGLILAHNHLSGNCQPSEKDIVATHRLQKLGAELELTLIDHMIFTRDRFFSMAAGGFLD
>Mature_148_residues
GVEIRICAEALERDAVARGFGRMPAALADPGFLQYIHSRFAMANEERLHVVYCDDRQRYLHDETLTIGGENSLVLRARPL
VHRALTIGAGGLILAHNHLSGNCQPSEKDIVATHRLQKLGAELELTLIDHMIFTRDRFFSMAAGGFLD

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=114, Percent_Identity=29.8245614035088, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI2367100, Length=144, Percent_Identity=29.1666666666667, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1788312, Length=145, Percent_Identity=31.0344827586207, Blast_Score=64, Evalue=4e-12,
Organism=Escherichia coli, GI1788997, Length=113, Percent_Identity=30.9734513274336, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 16582; Mature: 16451

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVEIRICAEALERDAVARGFGRMPAALADPGFLQYIHSRFAMANEERLHVVYCDDRQRY
CCEEEHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCHH
LHDETLTIGGENSLVLRARPLVHRALTIGAGGLILAHNHLSGNCQPSEKDIVATHRLQKL
HCCCEEEECCCCCEEEEECHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHC
GAELELTLIDHMIFTRDRFFSMAAGGFLD
CCCEEHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GVEIRICAEALERDAVARGFGRMPAALADPGFLQYIHSRFAMANEERLHVVYCDDRQRY
CEEEHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCHH
LHDETLTIGGENSLVLRARPLVHRALTIGAGGLILAHNHLSGNCQPSEKDIVATHRLQKL
HCCCEEEECCCCCEEEEECHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHC
GAELELTLIDHMIFTRDRFFSMAAGGFLD
CCCEEHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA