Click here to switch to the map view.

The map label for this gene is rsmI

Identifier: 85374023

GI number: 85374023

Start: 1238726

End: 1239430

Strand: Direct

Name: rsmI

Synonym: ELI_05980

Alternate gene names: 85374023

Gene position: 1238726-1239430 (Clockwise)

Preceding gene: 85374020

Following gene: 85374024

Centisome position: 40.58

GC content: 59.43

Gene sequence:

>705_bases
ATGACCGGCAAGCTGCTCAAGCACTTGGGCATCAGCAAATCGCTCTGGCGCTATGACGATCATAGCGATGCCAAAGCGCG
AGAGAAGATCGTCGCCGCGATTTCAGAGAAAGCGGTCGCACTGGTGAGCGATGCGGGCACGCCGCTCATTTCCGATCCAG
GCTATCGCCTCGTGCGAGATGCGAGGGATGCGTCCTTGCCAGTCACCACGATACCCGGCGCGTGCGCCGCAATTGCCGGA
CTCACGTTGTCAGGCCTGCCGAGCGACCGCTTCCTGTTTGCCGGGTTCCTGCCGGTGAAGGACAAGGCAAGGCGCGAAAT
GCTGGAAAAGCTCGCGCCGGTAGATGCCAGCCTGATATTCTACGAAACCGGTCCGCGGCTGTTGAAGAGCTTGGCCGCCA
TCGATGAAATGCTCCCTAATCGGGAAATCTCTGTCGCCCGCGAGCTGACCAAGCTGCACGAAGAGTGTCGGCGCGGGATG
GGTGCCGGTTTGATGGCACACTATCAAGCCAACCCGCCGAAGGGCGAGATCGTATTGATGGTCGGTCCGCCGCCTGAAGC
TGCGCCGGATGATACCGATGCAGAGCTGATGTTACGTGAGGCGCTCGAGACAATGAAGCCGTCACAGGCTGCGGGACATG
TGGCAAAGGCTACCGGACTCGATCGAAAAGACCTCTATTCCAGAGCCTTGGAGCTGAAAACTTGA

Upstream 100 bases:

>100_bases
GTATATAGTCGCCACGCCCATTGGCAATCTTGGCGATATCACGCTGCGGGCGATAGAGACGCTCCGACGCTGTGATGCGG
TGGCCTGTGAAGACACGCGG

Downstream 100 bases:

>100_bases
AGCGCCAGATTGCCGAGCGCAGCGGCCGCGATGGTGAGAGGCGCGCCGCGCTGTGGTTGCGGGCGAAAGGTTGGTCGATC
CTTGCGCAGCGGGTCAAGAC

Product: methyltransferase

Products: NA

Alternate protein names: 16S rRNA 2'-O-ribose C1402 methyltransferase; rRNA (cytidine-2'-O-)-methyltransferase RsmI

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MTGKLLKHLGISKSLWRYDDHSDAKAREKIVAAISEKAVALVSDAGTPLISDPGYRLVRDARDASLPVTTIPGACAAIAG
LTLSGLPSDRFLFAGFLPVKDKARREMLEKLAPVDASLIFYETGPRLLKSLAAIDEMLPNREISVARELTKLHEECRRGM
GAGLMAHYQANPPKGEIVLMVGPPPEAAPDDTDAELMLREALETMKPSQAAGHVAKATGLDRKDLYSRALELKT

Sequences:

>Translated_234_residues
MTGKLLKHLGISKSLWRYDDHSDAKAREKIVAAISEKAVALVSDAGTPLISDPGYRLVRDARDASLPVTTIPGACAAIAG
LTLSGLPSDRFLFAGFLPVKDKARREMLEKLAPVDASLIFYETGPRLLKSLAAIDEMLPNREISVARELTKLHEECRRGM
GAGLMAHYQANPPKGEIVLMVGPPPEAAPDDTDAELMLREALETMKPSQAAGHVAKATGLDRKDLYSRALELKT
>Mature_233_residues
TGKLLKHLGISKSLWRYDDHSDAKAREKIVAAISEKAVALVSDAGTPLISDPGYRLVRDARDASLPVTTIPGACAAIAGL
TLSGLPSDRFLFAGFLPVKDKARREMLEKLAPVDASLIFYETGPRLLKSLAAIDEMLPNREISVARELTKLHEECRRGMG
AGLMAHYQANPPKGEIVLMVGPPPEAAPDDTDAELMLREALETMKPSQAAGHVAKATGLDRKDLYSRALELKT

Specific function: Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA

COG id: COG0313

COG function: function code R; Predicted methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmI family

Homologues:

Organism=Escherichia coli, GI1789535, Length=184, Percent_Identity=46.7391304347826, Blast_Score=150, Evalue=5e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RSMI_ERYLH (Q2NAK3)

Other databases:

- EMBL:   CP000157
- RefSeq:   YP_458085.1
- STRING:   Q2NAK3
- GeneID:   3870747
- GenomeReviews:   CP000157_GR
- KEGG:   eli:ELI_05980
- NMPDR:   fig|314225.3.peg.1864
- eggNOG:   COG0313
- HOGENOM:   HBG529058
- OMA:   NANIPAR
- BioCyc:   ELIT314225:ELI_05980-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01877
- InterPro:   IPR000878
- InterPro:   IPR014777
- InterPro:   IPR008189
- InterPro:   IPR018063
- Gene3D:   G3DSA:3.40.1010.10
- TIGRFAMs:   TIGR00096

Pfam domain/function: PF00590 TP_methylase; SSF53790 Cor/por_Metransf

EC number: NA

Molecular weight: Translated: 25295; Mature: 25163

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS01296 RSMI

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGKLLKHLGISKSLWRYDDHSDAKAREKIVAAISEKAVALVSDAGTPLISDPGYRLVRD
CCCHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHH
ARDASLPVTTIPGACAAIAGLTLSGLPSDRFLFAGFLPVKDKARREMLEKLAPVDASLIF
CCCCCCCCCCCCHHHHHHHHCHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEE
YETGPRLLKSLAAIDEMLPNREISVARELTKLHEECRRGMGAGLMAHYQANPPKGEIVLM
EECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEE
VGPPPEAAPDDTDAELMLREALETMKPSQAAGHVAKATGLDRKDLYSRALELKT
ECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TGKLLKHLGISKSLWRYDDHSDAKAREKIVAAISEKAVALVSDAGTPLISDPGYRLVRD
CCHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHH
ARDASLPVTTIPGACAAIAGLTLSGLPSDRFLFAGFLPVKDKARREMLEKLAPVDASLIF
CCCCCCCCCCCCHHHHHHHHCHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEE
YETGPRLLKSLAAIDEMLPNREISVARELTKLHEECRRGMGAGLMAHYQANPPKGEIVLM
EECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEE
VGPPPEAAPDDTDAELMLREALETMKPSQAAGHVAKATGLDRKDLYSRALELKT
ECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA