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The map label for this gene is yedQ [H]

Identifier: 85373434

GI number: 85373434

Start: 639023

End: 640234

Strand: Direct

Name: yedQ [H]

Synonym: ELI_03035

Alternate gene names: 85373434

Gene position: 639023-640234 (Clockwise)

Preceding gene: 85373431

Following gene: 85373436

Centisome position: 20.94

GC content: 64.85

Gene sequence:

>1212_bases
ATGCAAACGCAGATTCTGGGGCTGTTGACGCCGCTCATGGCGCTCGTCTTCGCGGCGACCTTTGCGCTGTTCTGGCACCT
CGGCCGGATGAATCGTCACGTGCTCGGCTTTGCCGTCTCCTACGCGCTGTTCGCCTGCGGTTTCCTGTCCACGCACTTCC
TGCCGCCCGAAGCCTTATACGTGTTCCATGCGACGCAGGCATTCTATAGCCTCGGGTGTATCGTGCTGCTGGGCGCGCTG
TGCGAGCGGGCGGGGCAGCGGCTTCACATCGGCAGCCTCGCCTTCGTCTATGTCGTCAGCGCGCTGACCCTGGCGCTGAC
GACGAGCCTATCCAACGACGTCGGGCCGCGCCTGGTAATCGTCAACATCGGTTACGGCGTCATGTTCGCGATGGGTGTCA
CGACGCTACTGACCGCGCGCCGTCGCGATATCATCAGCGTGGCGATCATCGCCATCATGGCGTTCCAGGCGGTCGATTTC
CTCGTCCGGCCCACCCTCACTCTGCTGTTCGAACGGTCGATCCCGGCCGAGGTCTATCGCGACTCGATCTACTATTCGCT
GATCGGGCTGGTGCTCGGCGTGAAAACGGTCAGCACGGCCATGGTTCTGCTGGGAGCGACCATCGCCGAATGGGCGAAGG
ACCTGCGCGAGAGCGGCGAGCGCGACCCGCTGACCGGGCTGCTCAATCGCGGCGCTTTCGAGGATTCGATGCGCGATCTC
ATCCCGCGAGCCCAGACCGAGCGCCGACCGCTCAGCCTGGTTGTCGCCGATATCGATCATTTCAAGCAGGTGAACGACAT
CTGGGGTCACCAGGCCGGCGATGAAGCCATCTCAGGCTTCGGGGAACTGGTGCAAAGAACCGTTCGCGGCTGCGACATCG
GGGGCCGGATCGGCGGCGAGGAATTCTGCATCGCGGTATGGAACTGCGAGAACGAACCGGCCGAGCGGCTGGCCGACCGC
ATCCGCGAGGCCTTCGGTAGTCTCGAACATGCCGGGCTTAGCGATAATATCCGCCTCACTGCCAGCTTCGGCGTCGCAAC
CGCGCGTGAGGGCGAAACCTACCGCGCGCTGTTCGCGCGGGCCGACGCGGCGCTTTACGCGGCCAAGGCGAAGGGTCGCA
ACCGTGTGGAGAATGCCGAGCGGGAACTGCCGGGCGAAGCGACCCAAGAGCCGGCGGTCGGCGCTAGGGCCCTGCGGAAG
GCATCGGCCTAG

Upstream 100 bases:

>100_bases
TGGCCGAGGCGGCTGAAATTTAGCGCGCGATCCGCCCGAACTCACAACAGACCATTAACCCAATCGCCCTATCGCGCCTG
AAAGGGAGTGCGGCGGGGCG

Downstream 100 bases:

>100_bases
CTCGCGAAGGGCTTCGCTTCCGGCCGCAAGTACCCGAACCAGCGGCATCTTGACCTGCACATGCCATCACGCTTTCCAGC
CTGGGGGTGGGGTGAATGAG

Product: putative diguanylate cyclase (GGDEF)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MQTQILGLLTPLMALVFAATFALFWHLGRMNRHVLGFAVSYALFACGFLSTHFLPPEALYVFHATQAFYSLGCIVLLGAL
CERAGQRLHIGSLAFVYVVSALTLALTTSLSNDVGPRLVIVNIGYGVMFAMGVTTLLTARRRDIISVAIIAIMAFQAVDF
LVRPTLTLLFERSIPAEVYRDSIYYSLIGLVLGVKTVSTAMVLLGATIAEWAKDLRESGERDPLTGLLNRGAFEDSMRDL
IPRAQTERRPLSLVVADIDHFKQVNDIWGHQAGDEAISGFGELVQRTVRGCDIGGRIGGEEFCIAVWNCENEPAERLADR
IREAFGSLEHAGLSDNIRLTASFGVATAREGETYRALFARADAALYAAKAKGRNRVENAERELPGEATQEPAVGARALRK
ASA

Sequences:

>Translated_403_residues
MQTQILGLLTPLMALVFAATFALFWHLGRMNRHVLGFAVSYALFACGFLSTHFLPPEALYVFHATQAFYSLGCIVLLGAL
CERAGQRLHIGSLAFVYVVSALTLALTTSLSNDVGPRLVIVNIGYGVMFAMGVTTLLTARRRDIISVAIIAIMAFQAVDF
LVRPTLTLLFERSIPAEVYRDSIYYSLIGLVLGVKTVSTAMVLLGATIAEWAKDLRESGERDPLTGLLNRGAFEDSMRDL
IPRAQTERRPLSLVVADIDHFKQVNDIWGHQAGDEAISGFGELVQRTVRGCDIGGRIGGEEFCIAVWNCENEPAERLADR
IREAFGSLEHAGLSDNIRLTASFGVATAREGETYRALFARADAALYAAKAKGRNRVENAERELPGEATQEPAVGARALRK
ASA
>Mature_403_residues
MQTQILGLLTPLMALVFAATFALFWHLGRMNRHVLGFAVSYALFACGFLSTHFLPPEALYVFHATQAFYSLGCIVLLGAL
CERAGQRLHIGSLAFVYVVSALTLALTTSLSNDVGPRLVIVNIGYGVMFAMGVTTLLTARRRDIISVAIIAIMAFQAVDF
LVRPTLTLLFERSIPAEVYRDSIYYSLIGLVLGVKTVSTAMVLLGATIAEWAKDLRESGERDPLTGLLNRGAFEDSMRDL
IPRAQTERRPLSLVVADIDHFKQVNDIWGHQAGDEAISGFGELVQRTVRGCDIGGRIGGEEFCIAVWNCENEPAERLADR
IREAFGSLEHAGLSDNIRLTASFGVATAREGETYRALFARADAALYAAKAKGRNRVENAERELPGEATQEPAVGARALRK
ASA

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=234, Percent_Identity=32.4786324786325, Blast_Score=118, Evalue=8e-28,
Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=41.7721518987342, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1786584, Length=208, Percent_Identity=34.6153846153846, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI145693134, Length=184, Percent_Identity=36.4130434782609, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87081881, Length=206, Percent_Identity=32.0388349514563, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI1788381, Length=192, Percent_Identity=32.8125, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787802, Length=195, Percent_Identity=26.6666666666667, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI87081974, Length=179, Percent_Identity=26.2569832402235, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788085, Length=188, Percent_Identity=27.6595744680851, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787816, Length=154, Percent_Identity=34.4155844155844, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081977, Length=147, Percent_Identity=32.6530612244898, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=158, Percent_Identity=29.1139240506329, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787541, Length=160, Percent_Identity=31.25, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 43911; Mature: 43911

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTQILGLLTPLMALVFAATFALFWHLGRMNRHVLGFAVSYALFACGFLSTHFLPPEALY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
VFHATQAFYSLGCIVLLGALCERAGQRLHIGSLAFVYVVSALTLALTTSLSNDVGPRLVI
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
VNIGYGVMFAMGVTTLLTARRRDIISVAIIAIMAFQAVDFLVRPTLTLLFERSIPAEVYR
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
DSIYYSLIGLVLGVKTVSTAMVLLGATIAEWAKDLRESGERDPLTGLLNRGAFEDSMRDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHH
IPRAQTERRPLSLVVADIDHFKQVNDIWGHQAGDEAISGFGELVQRTVRGCDIGGRIGGE
HCCHHCCCCCHHEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
EFCIAVWNCENEPAERLADRIREAFGSLEHAGLSDNIRLTASFGVATAREGETYRALFAR
EEEEEEECCCCCHHHHHHHHHHHHHCCHHCCCCCCCEEEEEECCCEECCCCCHHHHHHHH
ADAALYAAKAKGRNRVENAERELPGEATQEPAVGARALRKASA
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MQTQILGLLTPLMALVFAATFALFWHLGRMNRHVLGFAVSYALFACGFLSTHFLPPEALY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
VFHATQAFYSLGCIVLLGALCERAGQRLHIGSLAFVYVVSALTLALTTSLSNDVGPRLVI
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
VNIGYGVMFAMGVTTLLTARRRDIISVAIIAIMAFQAVDFLVRPTLTLLFERSIPAEVYR
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
DSIYYSLIGLVLGVKTVSTAMVLLGATIAEWAKDLRESGERDPLTGLLNRGAFEDSMRDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHH
IPRAQTERRPLSLVVADIDHFKQVNDIWGHQAGDEAISGFGELVQRTVRGCDIGGRIGGE
HCCHHCCCCCHHEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
EFCIAVWNCENEPAERLADRIREAFGSLEHAGLSDNIRLTASFGVATAREGETYRALFAR
EEEEEEECCCCCHHHHHHHHHHHHHCCHHCCCCCCCEEEEEECCCEECCCCCHHHHHHHH
ADAALYAAKAKGRNRVENAERELPGEATQEPAVGARALRKASA
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA