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The map label for this gene is yciR [C]

Identifier: 85373314

GI number: 85373314

Start: 524134

End: 526485

Strand: Direct

Name: yciR [C]

Synonym: ELI_02435

Alternate gene names: 85373314

Gene position: 524134-526485 (Clockwise)

Preceding gene: 85373313

Following gene: 85373318

Centisome position: 17.17

GC content: 63.1

Gene sequence:

>2352_bases
GTGAGCGAGAACCGATCCGACGCGCTGAGCCTGCCGGCGACATTACCCCTGCTTGCTATCCTTGGCATCAAGGAATGCGA
CAGCGCGGACTGGCCGCGCCTGCGTGCATTGCAATACGCCCGTGTTGCGCAGCACACGCGCTTCCGCCTCGGCGCGCATT
TCGCCTGCGCTGCCATCTCCTGCTGGATTTCCCTGCAACATCTCGCGTGGCTGACGGTACTTGGCTGGGCTATCGGCTTG
GCGCTGACCCTCTCGATCTTCACCAGCCAGGACTGGCTTTTGCGCAAGGCCGACGGGCGCACGCTTTCGCAGCGCGAGGC
CTTTCGCCACGCGTCGGGCTCCGCCCTGGTTGCGATCGCTTGGGCGGCGCAGCCGGTTTTGCACTGGCTCTACGGGACGC
CAACCAGCATGCTGCAGGCCTGGCTCATCGTCATGGTCGTCACGCTCGGGTCGAGCCTGGCACTGGCGGCCGCACCGCTG
GGTGCGATCATATATATCGCGACGACATCGATGACGGCAATCGTCGTTTTCGGCCTTGCCGGCCAGTACCCGCCGGCGGT
CGCGGCGCTTCTCTACATGCTCGTCATCCTATGGGGCGTCTACCAGCGGGCCGAGGCCTTTCTGCGACAGAGCGCCGCAG
AGGCGGGGATGAACGAACGCAACGAAGTCGTCTCGCTCCTGCTGCGCGAATTCGAAGAGAACGAGGCCGACTGGCTGTGG
CAGATCGATACCCAGCGCAAGGTGCGCTCGGTCTCGCCGCGTTTCGCCTTTGCGCTCGGGCTCGAGCCCGGAGAGGCGGA
TGGCATGCCTTTCCTGCAACTGATAGCGGGCGATGCCTGGAAAACAGGTCAATTCCCCACCAGCCTGCACGATCTGGCCG
AGCGTCTGAAACGCAAGGAGAGCTTCTCCAACCTGCTGGTCAAGGTTTCGATCGATGGAGTCACCCGTTGGTGGGAACTG
TCGGGCACGCCGATGCTGGACGAGGAAGGCAAATATGTCGGTTATCGCGGGGTCGGATCGGACGTCACCGAACAGCGCGA
ATCCTCGGAAAAGATCGCCTATCTCGCGCGCTACGATACGCTCACGGAATTGCCCAACCGCTTGATGGTCAACGAATCGC
TCGGCGAAGCGATGAAATATGCCAAGCAGTGGCGCTCGCGCTGCGCTTTCATGATGATCGATCTCGACCGCTTCAAGGCG
GTCAACGATTCGCTCGGCCACCAAACCGGCGACGAGTTGCTGGCCGAAGTGTCGGGACGGCTCAAGAGCATCCTGTCCGA
AAACGAGATGTGCGGGCGGCTCGGCGGCGACGAATTCGCCATCGTGATCCGCGACGTGAAGGACAGGGATTATGTCGACA
CCGTCGCCCGCAGGGTCATCGAGCATCTTTCGCAGCCCTACGAGGTCAATCACCACATGCTCTATGTCGGGGCCAGCGTC
GGTTCCGCCATCGCCCCGCGCGACGGGCGAAGCGTCGAAGAGCTCATGCGCAATGCCGATCTCGCGCTCTACCGCGCCAA
GGATCTCGGCGGCGGCGAGCACTTCCAGTACGAACCATCGCTGCACAAATCCGCCGAAGAGCGGCGGCAGCTCGAATTCT
CGCTCCGCATGGCGCTGGATCGGCAAGAGTTCGAGCTGGCCTACCAGCCGGTCGTCGATGCCAATGACGAGACGATCATC
AGCTTCGAAGCATTGCTGCGCTGGAACAGCGCCGAACACGGCTTCGTCAGCCCCGCCAAGTTCATCCCTCTGGCCGAGGA
CACGCGGCTGATCGTGCCGATCGGCTCCTGGGTACTGGAACAGGCCTGTATCGAGGCGGCCAACTGGCCCGACCCGGTAA
AAGTCAATGTCAACGTCTCACCCGAACAATTGGTCGAGCCGGATTTCGTAGCGACTGTCGTGCGCGCTCTGTCGACCAGC
GGGCTGCCGGCCAACCGGCTTGAGCTGGAGGTGACGGAAAGCATCTTCGTGCGCGATGCGCTGGTGGCGGGAAAGGCGCT
CAAGGAAGTCATGCACCTCGGCTGCCAGGTCGCGCTCGACGACTTCGGCACCGGCTACAGCTCGCTCGGCTACCTGCGCC
AGCTCAGCTTCTCGACCATCAAGGTCGACCGCATGTTCGTGCAAGGGGCTGCGCAGGGCAGCAAGGAAAGCCTTGCCATC
ATCAGGGCCGTGGTCGCCATGGCGGACAGCCTAGATATGACGACGACCGCCGAAGGGGTCGAAAGCTTCGAGGAGGCGGA
GTTGATCCGCGAGCTCGGCTGCACCAAGATCCAGGGATATTACTTCGGGCGCCCCATGGTCAAAGCCGAAGCCCGCAAGC
TGTTCGACGTGCCGGGCCGTCTGCGCGCCTGA

Upstream 100 bases:

>100_bases
CGAATAGATTGATTTAGCAAAATAATTTTCATCGTCGAACCCGTATTTTCGGCGATATCCTTTACCGCGAAATAACCTTT
CGCACCTAATTCTCGCGTCC

Downstream 100 bases:

>100_bases
CGCGGCAGGCTGCTGCAAATCCCCCGGTCAGGCGGCCGCGAGCCGCTCCAGCGCCGCCTTGAATAGTGGCAGGCCGTCGG
TGCCGCCATGCGCGGCATCC

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 783; Mature: 782

Protein sequence:

>783_residues
MSENRSDALSLPATLPLLAILGIKECDSADWPRLRALQYARVAQHTRFRLGAHFACAAISCWISLQHLAWLTVLGWAIGL
ALTLSIFTSQDWLLRKADGRTLSQREAFRHASGSALVAIAWAAQPVLHWLYGTPTSMLQAWLIVMVVTLGSSLALAAAPL
GAIIYIATTSMTAIVVFGLAGQYPPAVAALLYMLVILWGVYQRAEAFLRQSAAEAGMNERNEVVSLLLREFEENEADWLW
QIDTQRKVRSVSPRFAFALGLEPGEADGMPFLQLIAGDAWKTGQFPTSLHDLAERLKRKESFSNLLVKVSIDGVTRWWEL
SGTPMLDEEGKYVGYRGVGSDVTEQRESSEKIAYLARYDTLTELPNRLMVNESLGEAMKYAKQWRSRCAFMMIDLDRFKA
VNDSLGHQTGDELLAEVSGRLKSILSENEMCGRLGGDEFAIVIRDVKDRDYVDTVARRVIEHLSQPYEVNHHMLYVGASV
GSAIAPRDGRSVEELMRNADLALYRAKDLGGGEHFQYEPSLHKSAEERRQLEFSLRMALDRQEFELAYQPVVDANDETII
SFEALLRWNSAEHGFVSPAKFIPLAEDTRLIVPIGSWVLEQACIEAANWPDPVKVNVNVSPEQLVEPDFVATVVRALSTS
GLPANRLELEVTESIFVRDALVAGKALKEVMHLGCQVALDDFGTGYSSLGYLRQLSFSTIKVDRMFVQGAAQGSKESLAI
IRAVVAMADSLDMTTTAEGVESFEEAELIRELGCTKIQGYYFGRPMVKAEARKLFDVPGRLRA

Sequences:

>Translated_783_residues
MSENRSDALSLPATLPLLAILGIKECDSADWPRLRALQYARVAQHTRFRLGAHFACAAISCWISLQHLAWLTVLGWAIGL
ALTLSIFTSQDWLLRKADGRTLSQREAFRHASGSALVAIAWAAQPVLHWLYGTPTSMLQAWLIVMVVTLGSSLALAAAPL
GAIIYIATTSMTAIVVFGLAGQYPPAVAALLYMLVILWGVYQRAEAFLRQSAAEAGMNERNEVVSLLLREFEENEADWLW
QIDTQRKVRSVSPRFAFALGLEPGEADGMPFLQLIAGDAWKTGQFPTSLHDLAERLKRKESFSNLLVKVSIDGVTRWWEL
SGTPMLDEEGKYVGYRGVGSDVTEQRESSEKIAYLARYDTLTELPNRLMVNESLGEAMKYAKQWRSRCAFMMIDLDRFKA
VNDSLGHQTGDELLAEVSGRLKSILSENEMCGRLGGDEFAIVIRDVKDRDYVDTVARRVIEHLSQPYEVNHHMLYVGASV
GSAIAPRDGRSVEELMRNADLALYRAKDLGGGEHFQYEPSLHKSAEERRQLEFSLRMALDRQEFELAYQPVVDANDETII
SFEALLRWNSAEHGFVSPAKFIPLAEDTRLIVPIGSWVLEQACIEAANWPDPVKVNVNVSPEQLVEPDFVATVVRALSTS
GLPANRLELEVTESIFVRDALVAGKALKEVMHLGCQVALDDFGTGYSSLGYLRQLSFSTIKVDRMFVQGAAQGSKESLAI
IRAVVAMADSLDMTTTAEGVESFEEAELIRELGCTKIQGYYFGRPMVKAEARKLFDVPGRLRA
>Mature_782_residues
SENRSDALSLPATLPLLAILGIKECDSADWPRLRALQYARVAQHTRFRLGAHFACAAISCWISLQHLAWLTVLGWAIGLA
LTLSIFTSQDWLLRKADGRTLSQREAFRHASGSALVAIAWAAQPVLHWLYGTPTSMLQAWLIVMVVTLGSSLALAAAPLG
AIIYIATTSMTAIVVFGLAGQYPPAVAALLYMLVILWGVYQRAEAFLRQSAAEAGMNERNEVVSLLLREFEENEADWLWQ
IDTQRKVRSVSPRFAFALGLEPGEADGMPFLQLIAGDAWKTGQFPTSLHDLAERLKRKESFSNLLVKVSIDGVTRWWELS
GTPMLDEEGKYVGYRGVGSDVTEQRESSEKIAYLARYDTLTELPNRLMVNESLGEAMKYAKQWRSRCAFMMIDLDRFKAV
NDSLGHQTGDELLAEVSGRLKSILSENEMCGRLGGDEFAIVIRDVKDRDYVDTVARRVIEHLSQPYEVNHHMLYVGASVG
SAIAPRDGRSVEELMRNADLALYRAKDLGGGEHFQYEPSLHKSAEERRQLEFSLRMALDRQEFELAYQPVVDANDETIIS
FEALLRWNSAEHGFVSPAKFIPLAEDTRLIVPIGSWVLEQACIEAANWPDPVKVNVNVSPEQLVEPDFVATVVRALSTSG
LPANRLELEVTESIFVRDALVAGKALKEVMHLGCQVALDDFGTGYSSLGYLRQLSFSTIKVDRMFVQGAAQGSKESLAII
RAVVAMADSLDMTTTAEGVESFEEAELIRELGCTKIQGYYFGRPMVKAEARKLFDVPGRLRA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=431, Percent_Identity=34.5707656612529, Blast_Score=266, Evalue=5e-72,
Organism=Escherichia coli, GI87081921, Length=441, Percent_Identity=30.6122448979592, Blast_Score=202, Evalue=5e-53,
Organism=Escherichia coli, GI226510982, Length=446, Percent_Identity=27.8026905829596, Blast_Score=163, Evalue=4e-41,
Organism=Escherichia coli, GI1787055, Length=239, Percent_Identity=35.9832635983264, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI87081845, Length=248, Percent_Identity=34.6774193548387, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1788502, Length=238, Percent_Identity=35.7142857142857, Blast_Score=138, Evalue=2e-33,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=32.520325203252, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788381, Length=434, Percent_Identity=27.1889400921659, Blast_Score=122, Evalue=9e-29,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=30.9322033898305, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1788849, Length=438, Percent_Identity=24.8858447488584, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1786507, Length=300, Percent_Identity=27.6666666666667, Blast_Score=106, Evalue=7e-24,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=27.1966527196653, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87082096, Length=235, Percent_Identity=27.6595744680851, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87081977, Length=182, Percent_Identity=30.7692307692308, Blast_Score=96, Evalue=9e-21,
Organism=Escherichia coli, GI1788956, Length=153, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786584, Length=168, Percent_Identity=29.1666666666667, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1787802, Length=171, Percent_Identity=28.6549707602339, Blast_Score=76, Evalue=1e-14,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=31.055900621118, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=27.710843373494, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=29.1428571428571, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI145693134, Length=154, Percent_Identity=31.8181818181818, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1787816, Length=155, Percent_Identity=29.6774193548387, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI1787410, Length=221, Percent_Identity=25.3393665158371, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87081974, Length=101, Percent_Identity=34.6534653465347, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 86951; Mature: 86819

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENRSDALSLPATLPLLAILGIKECDSADWPRLRALQYARVAQHTRFRLGAHFACAAIS
CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
CWISLQHLAWLTVLGWAIGLALTLSIFTSQDWLLRKADGRTLSQREAFRHASGSALVAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEE
WAAQPVLHWLYGTPTSMLQAWLIVMVVTLGSSLALAAAPLGAIIYIATTSMTAIVVFGLA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEEHHHHHHHHHHHCC
GQYPPAVAALLYMLVILWGVYQRAEAFLRQSAAEAGMNERNEVVSLLLREFEENEADWLW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEE
QIDTQRKVRSVSPRFAFALGLEPGEADGMPFLQLIAGDAWKTGQFPTSLHDLAERLKRKE
EECHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
SFSNLLVKVSIDGVTRWWELSGTPMLDEEGKYVGYRGVGSDVTEQRESSEKIAYLARYDT
HHHCEEEEEEECCCEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
LTELPNRLMVNESLGEAMKYAKQWRSRCAFMMIDLDRFKAVNDSLGHQTGDELLAEVSGR
HHHCCHHEEHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHH
LKSILSENEMCGRLGGDEFAIVIRDVKDRDYVDTVARRVIEHLSQPYEVNHHMLYVGASV
HHHHHCCCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
GSAIAPRDGRSVEELMRNADLALYRAKDLGGGEHFQYEPSLHKSAEERRQLEFSLRMALD
CCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHC
RQEFELAYQPVVDANDETIISFEALLRWNSAEHGFVSPAKFIPLAEDTRLIVPIGSWVLE
HHHHHHHCCCCCCCCCCEEEEHHHHHHCCCCCCCCCCCHHCCCCCCCCEEEEECHHHHHH
QACIEAANWPDPVKVNVNVSPEQLVEPDFVATVVRALSTSGLPANRLELEVTESIFVRDA
HHHHHHCCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHH
LVAGKALKEVMHLGCQVALDDFGTGYSSLGYLRQLSFSTIKVDRMFVQGAAQGSKESLAI
HHHHHHHHHHHHCCCEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
IRAVVAMADSLDMTTTAEGVESFEEAELIRELGCTKIQGYYFGRPMVKAEARKLFDVPGR
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCEECCCCHHHHHHHHHHCCCCC
LRA
CCC
>Mature Secondary Structure 
SENRSDALSLPATLPLLAILGIKECDSADWPRLRALQYARVAQHTRFRLGAHFACAAIS
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
CWISLQHLAWLTVLGWAIGLALTLSIFTSQDWLLRKADGRTLSQREAFRHASGSALVAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEE
WAAQPVLHWLYGTPTSMLQAWLIVMVVTLGSSLALAAAPLGAIIYIATTSMTAIVVFGLA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEEHHHHHHHHHHHCC
GQYPPAVAALLYMLVILWGVYQRAEAFLRQSAAEAGMNERNEVVSLLLREFEENEADWLW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEE
QIDTQRKVRSVSPRFAFALGLEPGEADGMPFLQLIAGDAWKTGQFPTSLHDLAERLKRKE
EECHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
SFSNLLVKVSIDGVTRWWELSGTPMLDEEGKYVGYRGVGSDVTEQRESSEKIAYLARYDT
HHHCEEEEEEECCCEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
LTELPNRLMVNESLGEAMKYAKQWRSRCAFMMIDLDRFKAVNDSLGHQTGDELLAEVSGR
HHHCCHHEEHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHH
LKSILSENEMCGRLGGDEFAIVIRDVKDRDYVDTVARRVIEHLSQPYEVNHHMLYVGASV
HHHHHCCCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
GSAIAPRDGRSVEELMRNADLALYRAKDLGGGEHFQYEPSLHKSAEERRQLEFSLRMALD
CCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHC
RQEFELAYQPVVDANDETIISFEALLRWNSAEHGFVSPAKFIPLAEDTRLIVPIGSWVLE
HHHHHHHCCCCCCCCCCEEEEHHHHHHCCCCCCCCCCCHHCCCCCCCCEEEEECHHHHHH
QACIEAANWPDPVKVNVNVSPEQLVEPDFVATVVRALSTSGLPANRLELEVTESIFVRDA
HHHHHHCCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHH
LVAGKALKEVMHLGCQVALDDFGTGYSSLGYLRQLSFSTIKVDRMFVQGAAQGSKESLAI
HHHHHHHHHHHHCCCEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
IRAVVAMADSLDMTTTAEGVESFEEAELIRELGCTKIQGYYFGRPMVKAEARKLFDVPGR
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCEECCCCHHHHHHHHHHCCCCC
LRA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]