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The map label for this gene is intD [C]

Identifier: 85372970

GI number: 85372970

Start: 175211

End: 176203

Strand: Direct

Name: intD [C]

Synonym: ELI_00715

Alternate gene names: 85372970

Gene position: 175211-176203 (Clockwise)

Preceding gene: 85372969

Following gene: 85372971

Centisome position: 5.74

GC content: 59.82

Gene sequence:

>993_bases
ATGGTGACGCTGGGAAGCGCGGGAGTGGCGGCAGGTGCGTTAGGCGCTCCCGCCGCGCGCGCTGCCGCGCGCAGATTGCT
CATCAAGGCGACACTTGCCGATCTGCCTACTGCTCCAGAGAAGCTTAAGGCTCCACTCTTTGCAGAATTCGCGGAGGAGT
TCTGGCTCGACTATTCACCGCATTGGAAGCCTTCCACGCGCGATGCATCTCGGGCTTACATCGACAAACGGCTGATACCA
CGGTTTGGGGCACTCTCGGTCGATGCGATTGAACGGGCCGACATCAATCGCTGGCGAGACAGCATGGCTGACGTGGGAGG
AGCCTTTAATCGCAGCATCCCGGTCCTGTCGGTTATGATGCAATATGCCGAGAAGCTCGGCTATCGCGAGAAGAACACCA
ACCCGTGTCGCGGTGTCTCTCGTTTCAAGCGGGACCTGCCGGAACGCTATCTGTCGGCCGATGAATATCGAAGGCTCGGC
AAGGTGCTGGCAGAGCACAATGGTGCCAATGCGTTCGTGGTCCCAGCTTTGCTGTTGCTGATCTATACCGGTGCACGGGT
TTCAGAGATTGCGACCCTGCGCTGGCGCTATGTCGAGTTGCCCCGCCTTGCGTTGCCTGATAGCAAGACGGGGCCGAAGA
CGATCTACCTCAACCCGCAGGCAATCGCTGTGCTCGATGGGCTGCAACGGCGCGGAGACGATCAGCTCGTGTTCCCGGCA
ATGTATCGCGAGGTGCCGATCAACCTAGGCCAGCACTGGGAGAAGATCAGGCGCAAGGCAGCCTTGCCCGATGTGCGCCT
GCATGATCTCCGCCACAGCTTTGCTTCGGTGGCCATAGCGAAAGGCATACCGCTTGCGACCATCGGCAAGCTACTCGGCC
ATGCGCTTCCTGAAACGACGGCACGATACGCGCACCTTGCTGACGAGGTGATTTCGGAAAGCGCTGACCGCATCTGTTCC
AGCCTCGCAAGCTCAATGGGGATGACCGCATGA

Upstream 100 bases:

>100_bases
CATCACATGGGATACAGAGCTTCCCGGCTTCGGACTTCGCAAGCGCAAGTCGGGACATCTCACGTGGATCGTAAAGCACA
GGCCGCGAGGCGTGCAGCGA

Downstream 100 bases:

>100_bases
CCAGCTATGATCTCAAGCGTATCCTTGCCGAGGAGCTGGCGCGCATCGTTCCGGGCGATGCCGGAAAGCGCCGCACGAAA
TTCGATTACGTCCTTCCCGG

Product: site-specific recombinase, phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MVTLGSAGVAAGALGAPAARAAARRLLIKATLADLPTAPEKLKAPLFAEFAEEFWLDYSPHWKPSTRDASRAYIDKRLIP
RFGALSVDAIERADINRWRDSMADVGGAFNRSIPVLSVMMQYAEKLGYREKNTNPCRGVSRFKRDLPERYLSADEYRRLG
KVLAEHNGANAFVVPALLLLIYTGARVSEIATLRWRYVELPRLALPDSKTGPKTIYLNPQAIAVLDGLQRRGDDQLVFPA
MYREVPINLGQHWEKIRRKAALPDVRLHDLRHSFASVAIAKGIPLATIGKLLGHALPETTARYAHLADEVISESADRICS
SLASSMGMTA

Sequences:

>Translated_330_residues
MVTLGSAGVAAGALGAPAARAAARRLLIKATLADLPTAPEKLKAPLFAEFAEEFWLDYSPHWKPSTRDASRAYIDKRLIP
RFGALSVDAIERADINRWRDSMADVGGAFNRSIPVLSVMMQYAEKLGYREKNTNPCRGVSRFKRDLPERYLSADEYRRLG
KVLAEHNGANAFVVPALLLLIYTGARVSEIATLRWRYVELPRLALPDSKTGPKTIYLNPQAIAVLDGLQRRGDDQLVFPA
MYREVPINLGQHWEKIRRKAALPDVRLHDLRHSFASVAIAKGIPLATIGKLLGHALPETTARYAHLADEVISESADRICS
SLASSMGMTA
>Mature_330_residues
MVTLGSAGVAAGALGAPAARAAARRLLIKATLADLPTAPEKLKAPLFAEFAEEFWLDYSPHWKPSTRDASRAYIDKRLIP
RFGALSVDAIERADINRWRDSMADVGGAFNRSIPVLSVMMQYAEKLGYREKNTNPCRGVSRFKRDLPERYLSADEYRRLG
KVLAEHNGANAFVVPALLLLIYTGARVSEIATLRWRYVELPRLALPDSKTGPKTIYLNPQAIAVLDGLQRRGDDQLVFPA
MYREVPINLGQHWEKIRRKAALPDVRLHDLRHSFASVAIAKGIPLATIGKLLGHALPETTARYAHLADEVISESADRICS
SLASSMGMTA

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36410; Mature: 36410

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTLGSAGVAAGALGAPAARAAARRLLIKATLADLPTAPEKLKAPLFAEFAEEFWLDYSP
CEECCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHCCCCCC
HWKPSTRDASRAYIDKRLIPRFGALSVDAIERADINRWRDSMADVGGAFNRSIPVLSVMM
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHH
QYAEKLGYREKNTNPCRGVSRFKRDLPERYLSADEYRRLGKVLAEHNGANAFVVPALLLL
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
IYTGARVSEIATLRWRYVELPRLALPDSKTGPKTIYLNPQAIAVLDGLQRRGDDQLVFPA
HHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEHHH
MYREVPINLGQHWEKIRRKAALPDVRLHDLRHSFASVAIAKGIPLATIGKLLGHALPETT
HHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHH
ARYAHLADEVISESADRICSSLASSMGMTA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVTLGSAGVAAGALGAPAARAAARRLLIKATLADLPTAPEKLKAPLFAEFAEEFWLDYSP
CEECCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHCCCCCC
HWKPSTRDASRAYIDKRLIPRFGALSVDAIERADINRWRDSMADVGGAFNRSIPVLSVMM
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHH
QYAEKLGYREKNTNPCRGVSRFKRDLPERYLSADEYRRLGKVLAEHNGANAFVVPALLLL
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
IYTGARVSEIATLRWRYVELPRLALPDSKTGPKTIYLNPQAIAVLDGLQRRGDDQLVFPA
HHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEHHH
MYREVPINLGQHWEKIRRKAALPDVRLHDLRHSFASVAIAKGIPLATIGKLLGHALPETT
HHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHH
ARYAHLADEVISESADRICSSLASSMGMTA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]