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The map label for this gene is intD [C]

Identifier: 85372971

GI number: 85372971

Start: 176200

End: 177369

Strand: Direct

Name: intD [C]

Synonym: ELI_00720

Alternate gene names: 85372971

Gene position: 176200-177369 (Clockwise)

Preceding gene: 85372970

Following gene: 85372974

Centisome position: 5.77

GC content: 57.26

Gene sequence:

>1170_bases
ATGACCAGCTATGATCTCAAGCGTATCCTTGCCGAGGAGCTGGCGCGCATCGTTCCGGGCGATGCCGGAAAGCGCCGCAC
GAAATTCGATTACGTCCTTCCCGGATTTGGCGAGCGCATCCACCCGTCCGGCAGGAAGAGCTACGTTCTTCAGCGCACAA
TGGGCGGCAAGCAGAGGCTCATCACCATAGGCGATGCGGCTATCCTAACCGAGCGGATCGCCAAGGATGTTGCGCGTCGC
CTCATCTTGAGGATCGAACTGGGCCAGAACCCGGCAGACAGGAAACAACGCGGCAAGAAGACGCCGACCTATGCTGCCTT
TCTTCGGCACTATTGGGAGGTTGCAGCTCCGGCCTGGAAGCCATCCACCCTTGAGATACATGACATCTACCGTCGAACGC
ACTTGGAACATGCATTCGCCGGAAAGTTCATCGACGAGATCAGCCATGCTGATGCTGTGCGCTGGCATGCAATGTTAACA
CGCACGGCAGGACCGGGCGCTGCAAACCGCGCTATGGAAATCCTAAAGGCGATGTTCGGCAAGGCGGAGGCATGGGGCTA
TCTCCCAGAGCACTCAAACCCCTTTCGTGGCGTCAAGCGCAACAAGGGGCGGAAGATCGAACGCTTTCTGAGCCAAGCCG
AGATGGCCCGTCTTGGAGAAGCCTTGTCACAGCATCGAGCCGACAAACCCAATGAGGTGGCGGTCATTTCGCTTCTCGCT
TTGACTGGATGTCGGCGCGGTGAAATTCTCAATCTCACTTGGGGCGAGGTTCAGGGGCGCAAGCTTAAGCTGACCGATAC
AAAGACTGGGCCACGTGTCATATGGCTTGGTAAAGAGGCGAGGGCAGTGATTGATCGCTTGCCGCGCAGAAGGGGCCATG
AGCGCGTCTTCCAGTTCGATGTGCTGCCCGTCTCTGCAATCGATTGGTTCTGGCGCATGCTGAGGGTGGAAGCGGGCATC
GAGGATTTGAGATTGCACGACCTTCGGCACAACTATGCTAGCCTAGCTGCGCGTTCAGCCGAGACCCTTCCGATGATCGG
CGAACTGCTTGGTCATCGAGATGTCGGCACCACGGCACGGTACGCACATTTCGATGATCGCAGTTCTCTTATCGCGACAC
GCCACGTCGGCAAGATCATCGAGCACAATCTCACACCAAAAAGAGATTGA

Upstream 100 bases:

>100_bases
CTGAAACGACGGCACGATACGCGCACCTTGCTGACGAGGTGATTTCGGAAAGCGCTGACCGCATCTGTTCCAGCCTCGCA
AGCTCAATGGGGATGACCGC

Downstream 100 bases:

>100_bases
ACTAGGTTTGGTCGAAGACACGTTTTCCCATGCTAATGCGCTCTTCCGTTGCATAGCCGTGGCAGCGATAAAACTCGCTG
ACAGCGTCATTATCGGCCCT

Product: site-specific recombinase, phage integrase family protein

Products: NA

Alternate protein names: Integrase Family Protein; Phage Integrase Family Protein; Integrase; Site-Specific Recombinase Phage Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family; Phage Integrase Family Site Specific Recombinase; Integrase/Recombinase Protein; Phage Related Integrase; Site-Specific Recombinase/Integrase; Prophage; Site Specific Recombinase; Prophage Integrase; Site-Specific Integrase/Recombinase; LOW QUALITY PROTEIN Phage Integrase; Tyrosine Recombinase XerC; Tyrosine Recombinase XerD; Tyrosine Site-Specific Integrase/Recombinase Protein; Phage Integrase Family

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MTSYDLKRILAEELARIVPGDAGKRRTKFDYVLPGFGERIHPSGRKSYVLQRTMGGKQRLITIGDAAILTERIAKDVARR
LILRIELGQNPADRKQRGKKTPTYAAFLRHYWEVAAPAWKPSTLEIHDIYRRTHLEHAFAGKFIDEISHADAVRWHAMLT
RTAGPGAANRAMEILKAMFGKAEAWGYLPEHSNPFRGVKRNKGRKIERFLSQAEMARLGEALSQHRADKPNEVAVISLLA
LTGCRRGEILNLTWGEVQGRKLKLTDTKTGPRVIWLGKEARAVIDRLPRRRGHERVFQFDVLPVSAIDWFWRMLRVEAGI
EDLRLHDLRHNYASLAARSAETLPMIGELLGHRDVGTTARYAHFDDRSSLIATRHVGKIIEHNLTPKRD

Sequences:

>Translated_389_residues
MTSYDLKRILAEELARIVPGDAGKRRTKFDYVLPGFGERIHPSGRKSYVLQRTMGGKQRLITIGDAAILTERIAKDVARR
LILRIELGQNPADRKQRGKKTPTYAAFLRHYWEVAAPAWKPSTLEIHDIYRRTHLEHAFAGKFIDEISHADAVRWHAMLT
RTAGPGAANRAMEILKAMFGKAEAWGYLPEHSNPFRGVKRNKGRKIERFLSQAEMARLGEALSQHRADKPNEVAVISLLA
LTGCRRGEILNLTWGEVQGRKLKLTDTKTGPRVIWLGKEARAVIDRLPRRRGHERVFQFDVLPVSAIDWFWRMLRVEAGI
EDLRLHDLRHNYASLAARSAETLPMIGELLGHRDVGTTARYAHFDDRSSLIATRHVGKIIEHNLTPKRD
>Mature_388_residues
TSYDLKRILAEELARIVPGDAGKRRTKFDYVLPGFGERIHPSGRKSYVLQRTMGGKQRLITIGDAAILTERIAKDVARRL
ILRIELGQNPADRKQRGKKTPTYAAFLRHYWEVAAPAWKPSTLEIHDIYRRTHLEHAFAGKFIDEISHADAVRWHAMLTR
TAGPGAANRAMEILKAMFGKAEAWGYLPEHSNPFRGVKRNKGRKIERFLSQAEMARLGEALSQHRADKPNEVAVISLLAL
TGCRRGEILNLTWGEVQGRKLKLTDTKTGPRVIWLGKEARAVIDRLPRRRGHERVFQFDVLPVSAIDWFWRMLRVEAGIE
DLRLHDLRHNYASLAARSAETLPMIGELLGHRDVGTTARYAHFDDRSSLIATRHVGKIIEHNLTPKRD

Specific function: Integrase From The Cryptic Lambdoic Prophage Dlp12. Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From Th

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44310; Mature: 44179

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSYDLKRILAEELARIVPGDAGKRRTKFDYVLPGFGERIHPSGRKSYVLQRTMGGKQRL
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHCCCCEEE
ITIGDAAILTERIAKDVARRLILRIELGQNPADRKQRGKKTPTYAAFLRHYWEVAAPAWK
EEECHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCC
PSTLEIHDIYRRTHLEHAFAGKFIDEISHADAVRWHAMLTRTAGPGAANRAMEILKAMFG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
KAEAWGYLPEHSNPFRGVKRNKGRKIERFLSQAEMARLGEALSQHRADKPNEVAVISLLA
CHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LTGCRRGEILNLTWGEVQGRKLKLTDTKTGPRVIWLGKEARAVIDRLPRRRGHERVFQFD
HHCCCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCCEEEEE
VLPVSAIDWFWRMLRVEAGIEDLRLHDLRHNYASLAARSAETLPMIGELLGHRDVGTTAR
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHH
YAHFDDRSSLIATRHVGKIIEHNLTPKRD
EEECCCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TSYDLKRILAEELARIVPGDAGKRRTKFDYVLPGFGERIHPSGRKSYVLQRTMGGKQRL
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHCCCCEEE
ITIGDAAILTERIAKDVARRLILRIELGQNPADRKQRGKKTPTYAAFLRHYWEVAAPAWK
EEECHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCC
PSTLEIHDIYRRTHLEHAFAGKFIDEISHADAVRWHAMLTRTAGPGAANRAMEILKAMFG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
KAEAWGYLPEHSNPFRGVKRNKGRKIERFLSQAEMARLGEALSQHRADKPNEVAVISLLA
CHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LTGCRRGEILNLTWGEVQGRKLKLTDTKTGPRVIWLGKEARAVIDRLPRRRGHERVFQFD
HHCCCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCCEEEEE
VLPVSAIDWFWRMLRVEAGIEDLRLHDLRHNYASLAARSAETLPMIGELLGHRDVGTTAR
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHH
YAHFDDRSSLIATRHVGKIIEHNLTPKRD
EEECCCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA