Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
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Accession | NC_007705 |
Length | 4,940,217 |
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The map label for this gene is thiL [H]
Identifier: 84625286
GI number: 84625286
Start: 4106224
End: 4107198
Strand: Reverse
Name: thiL [H]
Synonym: XOO_3629
Alternate gene names: 84625286
Gene position: 4107198-4106224 (Counterclockwise)
Preceding gene: 84625287
Following gene: 84625285
Centisome position: 83.14
GC content: 69.13
Gene sequence:
>975_bases ATGCCCGAATTCGATCTAATCGCCCGGCTGCGCGTGCGCATTGCTGCGCGTGCCGATGTGCCGTTGGGCATTGGCGACGA TGCGGCATTGCTGCATCCGCCGGCCGGTGAGCAGCTGGCGATCACCACCGATACGCTCAATGCCGGCGTGCATTTTCCGC AGGAAACCCGCGCCGACGATCTGGGCTGGAAGACGCTGGCAGTCAATCTCTCTGACCTGGCGGCGATGGGCGCGCAACCG CGTTGGTGCACCTTGTCGTTGTCGTTGCCGCACGACGATGCCGCATGGGTGGATCTATTCGCCGATGGCTTCTTCGCGCT GGCCGATGCGCACGACATCGTGCTGGTCGGCGGCGACACCACCCGCGGGCCGCTCTCGTGCGCTGTAACGGCAATCGGTA GCGTGCCGCCGAGCGCGGCGTTGCGGCGCGATGGTGCGCGCATTGGCGATGACGTGTGGGTCACCGGTGCGCCGGGTGAG GCCGCCGCCGCGTTGGCGCTGTGGCAAGCCGGCCAGCTGGATGTGACCTGCGCGGCGGCTGACCCGTTGCACGAGCAGTG GCGCAGCCGCTTGCTGCGTCCGCAGCCACGCGTACAGGCCGGGCTGCGTTTGCGCGGGCTTGCGCATGCCTGCGTGGACA TTTCCGACGGGCTGCTGGCCGATCTGGGGCATCTGTGCGACCGCAGCGGTGTGGGCGCGCAACTGGCGCTGGCCGCGTTG CCGGCAATGCCGCGCAGTGCCGGGACCAGCGTGGCGCAGTGCCCTGGCTGGCAACTCGGCGGTGGCGACGACTACGAGCT GTGCTTCACCGCCGCGCCGCAGCATCGCGCTGCGGTGGCGCAGGCAATGGAGTTCGCCGAGGTGGCCGCGACGCGCATCG GCCAGATTGTCGCCACGCCCGGCGTGGTGGTGCACGACGCCGACGGTAACCCTTGGCAACCGCTGCGGCGCGGCTATCAA CACTTCGTTGGCTGA
Upstream 100 bases:
>100_bases GCGCATCATTTGGTGGGCAGGCGGCAAGCAATCGTGCCGCACCTCGCAACGCCTGCTGCGACGAATCCCCAATGCACAAT CTCCACTCCCGGCTCCTCAA
Downstream 100 bases:
>100_bases GTCGCTCGTTATCAGGAATTCTTGAGCACCGGGTCCCGGTGCTTAGGGCAATCCCGAATCCCGGCCCTTGAACCATACCG TACCGTCTGGTGCGTTCGCG
Product: thiamine monophosphate kinase
Products: NA
Alternate protein names: Thiamine-phosphate kinase [H]
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MPEFDLIARLRVRIAARADVPLGIGDDAALLHPPAGEQLAITTDTLNAGVHFPQETRADDLGWKTLAVNLSDLAAMGAQP RWCTLSLSLPHDDAAWVDLFADGFFALADAHDIVLVGGDTTRGPLSCAVTAIGSVPPSAALRRDGARIGDDVWVTGAPGE AAAALALWQAGQLDVTCAAADPLHEQWRSRLLRPQPRVQAGLRLRGLAHACVDISDGLLADLGHLCDRSGVGAQLALAAL PAMPRSAGTSVAQCPGWQLGGGDDYELCFTAAPQHRAAVAQAMEFAEVAATRIGQIVATPGVVVHDADGNPWQPLRRGYQ HFVG
Sequences:
>Translated_324_residues MPEFDLIARLRVRIAARADVPLGIGDDAALLHPPAGEQLAITTDTLNAGVHFPQETRADDLGWKTLAVNLSDLAAMGAQP RWCTLSLSLPHDDAAWVDLFADGFFALADAHDIVLVGGDTTRGPLSCAVTAIGSVPPSAALRRDGARIGDDVWVTGAPGE AAAALALWQAGQLDVTCAAADPLHEQWRSRLLRPQPRVQAGLRLRGLAHACVDISDGLLADLGHLCDRSGVGAQLALAAL PAMPRSAGTSVAQCPGWQLGGGDDYELCFTAAPQHRAAVAQAMEFAEVAATRIGQIVATPGVVVHDADGNPWQPLRRGYQ HFVG >Mature_323_residues PEFDLIARLRVRIAARADVPLGIGDDAALLHPPAGEQLAITTDTLNAGVHFPQETRADDLGWKTLAVNLSDLAAMGAQPR WCTLSLSLPHDDAAWVDLFADGFFALADAHDIVLVGGDTTRGPLSCAVTAIGSVPPSAALRRDGARIGDDVWVTGAPGEA AAALALWQAGQLDVTCAAADPLHEQWRSRLLRPQPRVQAGLRLRGLAHACVDISDGLLADLGHLCDRSGVGAQLALAALP AMPRSAGTSVAQCPGWQLGGGDDYELCFTAAPQHRAAVAQAMEFAEVAATRIGQIVATPGVVVHDADGNPWQPLRRGYQH FVG
Specific function: Thiamine biosynthesis. [C]
COG id: COG0611
COG function: function code H; Thiamine monophosphate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thiamine-monophosphate kinase family [H]
Homologues:
Organism=Escherichia coli, GI1786619, Length=322, Percent_Identity=47.2049689440994, Blast_Score=248, Evalue=3e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000728 - InterPro: IPR010918 - InterPro: IPR016188 - InterPro: IPR006283 [H]
Pfam domain/function: PF00586 AIRS; PF02769 AIRS_C [H]
EC number: =2.7.4.16 [H]
Molecular weight: Translated: 33945; Mature: 33814
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEFDLIARLRVRIAARADVPLGIGDDAALLHPPAGEQLAITTDTLNAGVHFPQETRADD CCCHHHHHHHHHHEEEECCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCC LGWKTLAVNLSDLAAMGAQPRWCTLSLSLPHDDAAWVDLFADGFFALADAHDIVLVGGDT CCCEEEEEEHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCEEEEECCCEEEEECCCC TRGPLSCAVTAIGSVPPSAALRRDGARIGDDVWVTGAPGEAAAALALWQAGQLDVTCAAA CCCCHHEEEEECCCCCCHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHCCCCEEEEEECC DPLHEQWRSRLLRPQPRVQAGLRLRGLAHACVDISDGLLADLGHLCDRSGVGAQLALAAL CHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHH PAMPRSAGTSVAQCPGWQLGGGDDYELCFTAAPQHRAAVAQAMEFAEVAATRIGQIVATP CCCCCCCCCCHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECC GVVVHDADGNPWQPLRRGYQHFVG CEEEECCCCCCCHHHHHHHHHHCC >Mature Secondary Structure PEFDLIARLRVRIAARADVPLGIGDDAALLHPPAGEQLAITTDTLNAGVHFPQETRADD CCHHHHHHHHHHEEEECCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCC LGWKTLAVNLSDLAAMGAQPRWCTLSLSLPHDDAAWVDLFADGFFALADAHDIVLVGGDT CCCEEEEEEHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCEEEEECCCEEEEECCCC TRGPLSCAVTAIGSVPPSAALRRDGARIGDDVWVTGAPGEAAAALALWQAGQLDVTCAAA CCCCHHEEEEECCCCCCHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHCCCCEEEEEECC DPLHEQWRSRLLRPQPRVQAGLRLRGLAHACVDISDGLLADLGHLCDRSGVGAQLALAAL CHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHH PAMPRSAGTSVAQCPGWQLGGGDDYELCFTAAPQHRAAVAQAMEFAEVAATRIGQIVATP CCCCCCCCCCHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECC GVVVHDADGNPWQPLRRGYQHFVG CEEEECCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]