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The map label for this gene is nusB [H]

Identifier: 84625287

GI number: 84625287

Start: 4107419

End: 4107889

Strand: Reverse

Name: nusB [H]

Synonym: XOO_3630

Alternate gene names: 84625287

Gene position: 4107889-4107419 (Counterclockwise)

Preceding gene: 84625288

Following gene: 84625286

Centisome position: 83.15

GC content: 64.97

Gene sequence:

>471_bases
ATGAGCAAGCCCGGTGGACACCCGCGCCACGGCCGTCGCGACGGCATCGACCCGGTGCTGCGTTCGCGCGCACGTCGGCG
TGCCTTGCAGGCAGTGTATGCGTGGCAGATTTCCGGTGGCTTCGCCAAGCAGGTGATCGCCCAGTTCGCTCACGAGCAGG
CGCACGAAGTGGCCGATCTGGCGTACTTCGAGAACCTGGTCGAAGGCGTGCTGACCAATCGTGCCGAACTGGATACCGCG
CTGACCCCGTACCTGGATCGCGGCGTGGAAGAGGTCGATGCGATCGAACGCGCAGTGCTGCGGTTGGCCGCCTACGAATT
GCTGTACCGCCAGGACGTGCCGTACCGCGTGGTGATCAACGAAGCGATCGAAACCGCCAAGCGCTTCGGCTCCGAACACG
GTCACACCTATGTAAACGGGGTGCTGGACCGCGCCGCTGTGGAGTGGCGCAAGGTCGAGTCCGGCGCTTGA

Upstream 100 bases:

>100_bases
TGGAAGATGCCGAAGCGCGTGCCGGCGGCAGCCACGGCAACAAGGGCGAGGAGTGCGCGCTTGCAGCGCTGGAGCTGGTG
AATTTGATGGAGTTGTTGCC

Downstream 100 bases:

>100_bases
GCCACGGGATTCGGCAGTGGTGATTCGGGATTGGCAGCGAGCGACGGTCCCGCCCACGCAAGGTGCAAGCGCTTGGCTTG
AGTAATTCCGCCTTGAGGTG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MSKPGGHPRHGRRDGIDPVLRSRARRRALQAVYAWQISGGFAKQVIAQFAHEQAHEVADLAYFENLVEGVLTNRAELDTA
LTPYLDRGVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHTYVNGVLDRAAVEWRKVESGA

Sequences:

>Translated_156_residues
MSKPGGHPRHGRRDGIDPVLRSRARRRALQAVYAWQISGGFAKQVIAQFAHEQAHEVADLAYFENLVEGVLTNRAELDTA
LTPYLDRGVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHTYVNGVLDRAAVEWRKVESGA
>Mature_155_residues
SKPGGHPRHGRRDGIDPVLRSRARRRALQAVYAWQISGGFAKQVIAQFAHEQAHEVADLAYFENLVEGVLTNRAELDTAL
TPYLDRGVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHTYVNGVLDRAAVEWRKVESGA

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=131, Percent_Identity=52.6717557251908, Blast_Score=125, Evalue=9e-31,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 17537; Mature: 17406

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPGGHPRHGRRDGIDPVLRSRARRRALQAVYAWQISGGFAKQVIAQFAHEQAHEVADL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AYFENLVEGVLTNRAELDTALTPYLDRGVEEVDAIERAVLRLAAYELLYRQDVPYRVVIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
EAIETAKRFGSEHGHTYVNGVLDRAAVEWRKVESGA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKPGGHPRHGRRDGIDPVLRSRARRRALQAVYAWQISGGFAKQVIAQFAHEQAHEVADL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AYFENLVEGVLTNRAELDTALTPYLDRGVEEVDAIERAVLRLAAYELLYRQDVPYRVVIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
EAIETAKRFGSEHGHTYVNGVLDRAAVEWRKVESGA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA