| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is murF [H]
Identifier: 84625264
GI number: 84625264
Start: 4081372
End: 4082883
Strand: Reverse
Name: murF [H]
Synonym: XOO_3607
Alternate gene names: 84625264
Gene position: 4082883-4081372 (Counterclockwise)
Preceding gene: 84625265
Following gene: 84625263
Centisome position: 82.65
GC content: 66.6
Gene sequence:
>1512_bases ATGAAGCTCACCCCACTGTCATTGATTGCGCATTGGGCCGGCGGCGAACTGCATGGCGACGACGCCATGATCGATGCGGT CGGCAACGACACCCGCACGCTCGCCAATGGCAGCCTGTATAGCGCGCTGCGCGGCGAGCGTTTCGATGGACATGACTTTG CCGCCGACGCCGTCGCGCGTGGGGCCAGCGGATTGCTGGTGGAGCGCCTGCTGCCGGCGCTGAGCGTACCGCAGGTGGTG GTGAAAGATACCGAGCTGGCACTGGCGCGGATTGCTGCCAGTATGCAGCGCGACCGCGTCACGCGCGTGCTCGCGTTGAC CGGTTCCAACGGCAAGACCAGCGTCAAGGCGCTGCTGCTGTCGATCCTGCAGGAAGCCGGGCGCGTGGAGGGCACGACCG TGTACGCCACGCCGGGCAACCGCAACAACGAGATCGGTTTGCCGCTGGCCGTGATTGCCGCGCCTGACGATGCGGACTTT GCGATCTACGAAATGGGTGCAGGCAAGCCGGGCGATATTGCCTATCTGACCGATATCGCGCAGCCGCATGTCGCGCTGGT CAACAACATCGCGCCCGCCCATCTGGAACGCCTGGGCAGCTTGCTCGGCATTGCACAGACCAAGGGCGCCATCTACGCCG CGCTGCCCGCCGATGGCGTGGCCGTGATCAATGCCGATGACGCTTTTGGCATGTGGTTCGAGCAGCAGTTGCAGGCGCAG CCGGTGCAGGGACGTTGCATCGTGCGCTACGGCTTGCAGATCGGTGCCGATATCACGGCGCGTGAGCTGCAACTGCAGGC TGGCGCTGCGCAGTTCACCTTGGTGACCCCGCAGGGCGAAGCGCAGGTTGCACTGCCGTTGCCGGGCCGCCACAACGTGC TCAACGCCTTGGCGGCAACCGGTCTGGCACTTGGTGCCGGCATCGCCTTGCCGGTGATCGCGGCCGGTCTGGCGCAGGCG CATCCGGTGGCCGGTCGGCAAATCGCGCAGACCTTGCCGAGTGGCGCGGTGCTGATCGACGACAGCTACAACGCCAACCC TGGCTCGCTGGATGCGGCCATCGATGCGTTGGCCGCCGCACCCGGCGAAGGCTGGCTGGTGCTCGGCGACATGCGCGAAC TCGGCGCCGAAGGCCTCGCATTGCATGCCGCTGCCGGACGTCGCGCACGCGCGGCCAAGCTGCAGCGGCTGTACGCGCTG GGCGAGCTCAGCGCCGCCGCGGCGCAGGCATTTGGCGACGGCGGCCGCGTGTTCGCCACACACGGCGAGTTGATCGACGC CTTGCAGGCAGATCTGGTCGATACCGCCAGCCGGGAAACACGCACACAGCAACACGCATCGGGAAATACGCAGGAACATG CAGTGATTCACCAACAGAAATCGCCGTCCACGGCCGCTCTTTCAGGTGCCGCCTCCATCACGATCCTGGTGAAGGGTTCG CGCGGCAGCGCGATGGACCGCGTCGTCACCGCGCTGCTCGCATCGGCGGAGGGCGCATCCCATGCTGCTTGA
Upstream 100 bases:
>100_bases ACGAGCCATACCAAGAAGTTGCCGGCGTGCGGCATGCCTTCGACGACGCCATCGTGGCGGCGCAGGCGCTGCTGCCGCGC ACCGTGTTGGGAGTGCGCCC
Downstream 100 bases:
>100_bases GCTGGCCCGTTGGCTGCAGCAACTGGAGAGCCTGTTCGGGCTGTTCAACTATTTGACCTTCCGCGGCATTTTGGCTGCGT TGACCGCGCTGTTCCTGTCG
Product: UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase
Products: NA
Alternate protein names: D-alanyl-D-alanine-adding enzyme; UDP-MurNAc-pentapeptide synthetase [H]
Number of amino acids: Translated: 503; Mature: 503
Protein sequence:
>503_residues MKLTPLSLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERLLPALSVPQVV VKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSILQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADF AIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGIAQTKGAIYAALPADGVAVINADDAFGMWFEQQLQAQ PVQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTPQGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQA HPVAGRQIAQTLPSGAVLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYAL GELSAAAAQAFGDGGRVFATHGELIDALQADLVDTASRETRTQQHASGNTQEHAVIHQQKSPSTAALSGAASITILVKGS RGSAMDRVVTALLASAEGASHAA
Sequences:
>Translated_503_residues MKLTPLSLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERLLPALSVPQVV VKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSILQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADF AIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGIAQTKGAIYAALPADGVAVINADDAFGMWFEQQLQAQ PVQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTPQGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQA HPVAGRQIAQTLPSGAVLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYAL GELSAAAAQAFGDGGRVFATHGELIDALQADLVDTASRETRTQQHASGNTQEHAVIHQQKSPSTAALSGAASITILVKGS RGSAMDRVVTALLASAEGASHAA >Mature_503_residues MKLTPLSLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERLLPALSVPQVV VKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSILQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADF AIYEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGIAQTKGAIYAALPADGVAVINADDAFGMWFEQQLQAQ PVQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTPQGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQA HPVAGRQIAQTLPSGAVLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYAL GELSAAAAQAFGDGGRVFATHGELIDALQADLVDTASRETRTQQHASGNTQEHAVIHQQKSPSTAALSGAASITILVKGS RGSAMDRVVTALLASAEGASHAA
Specific function: Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein [H]
COG id: COG0770
COG function: function code M; UDP-N-acetylmuramyl pentapeptide synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family [H]
Homologues:
Organism=Escherichia coli, GI1786274, Length=488, Percent_Identity=42.2131147540984, Blast_Score=300, Evalue=1e-82,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005863 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: =6.3.2.10 [H]
Molecular weight: Translated: 51606; Mature: 51606
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLTPLSLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVAR CCCCHHHHHHHHCCCEECCCCCEEEECCCCCCEECCCCHHHHHCCCCCCCCHHHHHHHHC GASGLLVERLLPALSVPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLL CCCHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHH SILQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIA HHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCEEEEECCC QPHVALVNNIAPAHLERLGSLLGIAQTKGAIYAALPADGVAVINADDAFGMWFEQQLQAQ CCHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHCC PVQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTPQGEAQVALPLPGRHNVLNALAAT CCCCEEEEEECCEECCCCCHHHEEEECCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHH GLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSGAVLIDDSYNANPGSLDAAIDALAAA HHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCC PGEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYALGELSAAAAQAFGDGGRVFAT CCCCEEEECCHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE HGELIDALQADLVDTASRETRTQQHASGNTQEHAVIHQQKSPSTAALSGAASITILVKGS CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCCCHHHCCCCEEEEEEEECC RGSAMDRVVTALLASAEGASHAA CCCHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MKLTPLSLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVAR CCCCHHHHHHHHCCCEECCCCCEEEECCCCCCEECCCCHHHHHCCCCCCCCHHHHHHHHC GASGLLVERLLPALSVPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLL CCCHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHH SILQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIA HHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCEEEEECCC QPHVALVNNIAPAHLERLGSLLGIAQTKGAIYAALPADGVAVINADDAFGMWFEQQLQAQ CCHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHCC PVQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTPQGEAQVALPLPGRHNVLNALAAT CCCCEEEEEECCEECCCCCHHHEEEECCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHH GLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSGAVLIDDSYNANPGSLDAAIDALAAA HHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCC PGEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYALGELSAAAAQAFGDGGRVFAT CCCCEEEECCHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE HGELIDALQADLVDTASRETRTQQHASGNTQEHAVIHQQKSPSTAALSGAASITILVKGS CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCCCHHHCCCCEEEEEEEECC RGSAMDRVVTALLASAEGASHAA CCCHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2668880; 8973200; 1630901; 9278503; 9166795; 2186811; 11090285 [H]