| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is murE [H]
Identifier: 84625265
GI number: 84625265
Start: 4082880
End: 4084367
Strand: Reverse
Name: murE [H]
Synonym: XOO_3608
Alternate gene names: 84625265
Gene position: 4084367-4082880 (Counterclockwise)
Preceding gene: 84625266
Following gene: 84625264
Centisome position: 82.68
GC content: 66.4
Gene sequence:
>1488_bases GTGAGCCGTTCCATGGCGCTTTCGCAGTTGCTGCCGGACGTGGCGCTGCCGCACGACGTGCAGGTCTCCGGTCTGGTGAT GGATAGCCGTACCGTTGCTCCGGGCGATGCGTTCGTGGCGATCGCCGGCTTCGGTGCGCATGGCCTGGGCTTTGTCGAAC AAGCGCGCGCCAATGGCGCAACAGCGGTGTTGTTCGAGCCGCCGGCTCCGGACGGTCTGCCGGTCCCCGTCGATGCGATT GCCGTGCCCGGTTTGCGCGCGCGCCTTGGCGTGATGGCCGATCAATTTCATGGCCGGCCGTCGCATGCAATGCGCATGGT CGGCGTCACTGGCACCAATGGCAAGACCTCCACCGTACAGTTGCTGGCGCAGGCGCTGACGCTGCTCGGTACGCCCACCG GCACGCTCGGCACCCTTGGCGTCGGTCTGTATGGTGCGGCCGTGTCGACCGGTTTCACCACGCCGCTGGTGCTGCCCACG CATGCGTTGCTGGCGCAGTTGCGCGATGAGGGCGCGCAGGCGGTGGCAATGGAGGTCAGCTCGCACGCGCTCGATCAGGG CCGCGTGGATGCGGTGCATTTCGACGTCGCGGTGTTCACCAATCTCACCCGCGATCATCTCGATTACCACGGCGAGATGG CGCAATACGGCGCCGCGAAGGCCAAGCTGTTCACCCGCCCTGGCTTGAAAGCCGCCGTGGTGAATCTGGACGATGGCTTC GGCCGCACGCTGTTCGCTTCGCGCGATCCCGTGCTGCGCGCGATCGGCGTGAGCTCGCGCGCACATGCCGATGCCAGCGT GAGCGCGCAGGCATTGCAGCTGGACCACAACGGCATCAACTTCGCCCTGAATATCCAGGGCGAAGTGCATCCGGTGCATT CGCCGTTGCTGGGCCGCTTCAACGTGGACAACCTGCTGGCCGTGGCCGGCGCGTTGTGGGCGCTGGACATCGCACCCGCG CAGATCGCCACCGTGCTCGGTCAGTTGCAGCCGATCCATGGCCGCATGAACCGTCTCGGTGGCGCACATGGCGCACCATT GGTGGTGGTCGATTACGCACACACCCCGGATGCGCTGGAACAGGCATTGAGCAGCCTGCGTTCGCATGCGCAGGACCGGC TGATCTGCGTGTTCGGCTGCGGTGGTGAACGTGACACCGGCAAACGCCCGCAGATGGCGGCGATTGCAGAACTCAACGCC GATGTGGCAATCGTCACCGACGACAACCCGCGTGGCGAAGATGGCGATGCGATTGTGGCCGATATCCTGCGCGGCTTCGC GCGCCCGGATGCCGCCATCGTACAGCGCGACCGCGCCGCAGCGATCCATCAGGCCATCGCCATGGCCAGCGCGTCCGACA TCGTGTTGATCGCCGGCAAGGGACACGAGCCATACCAAGAAGTTGCCGGCGTGCGGCATGCCTTCGACGACGCCATCGTG GCGGCGCAGGCGCTGCTGCCGCGCACCGTGTTGGGAGTGCGCCCATGA
Upstream 100 bases:
>100_bases CGGACCCGGTGGACGAAGTGTCTGCCGGCATCCCGACCGCACTGGCGCCTGCGCCGGCCGCCGCGCCAGCGCAGCCCGCG CCGTTGCAGGAGAGCCGCCA
Downstream 100 bases:
>100_bases AGCTCACCCCACTGTCATTGATTGCGCATTGGGCCGGCGGCGAACTGCATGGCGACGACGCCATGATCGATGCGGTCGGC AACGACACCCGCACGCTCGC
Product: UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
Products: NA
Alternate protein names: Meso-A2pm-adding enzyme; Meso-diaminopimelate-adding enzyme; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; UDP-MurNAc-tripeptide synthetase; UDP-N-acetylmuramyl-tripeptide synthetase [H]
Number of amino acids: Translated: 495; Mature: 494
Protein sequence:
>495_residues MSRSMALSQLLPDVALPHDVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVLFEPPAPDGLPVPVDAI AVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLGTLGVGLYGAAVSTGFTTPLVLPT HALLAQLRDEGAQAVAMEVSSHALDQGRVDAVHFDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTRPGLKAAVVNLDDGF GRTLFASRDPVLRAIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAGALWALDIAPA QIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDRLICVFGCGGERDTGKRPQMAAIAELNA DVAIVTDDNPRGEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVAGVRHAFDDAIV AAQALLPRTVLGVRP
Sequences:
>Translated_495_residues MSRSMALSQLLPDVALPHDVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVLFEPPAPDGLPVPVDAI AVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLGTLGVGLYGAAVSTGFTTPLVLPT HALLAQLRDEGAQAVAMEVSSHALDQGRVDAVHFDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTRPGLKAAVVNLDDGF GRTLFASRDPVLRAIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAGALWALDIAPA QIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDRLICVFGCGGERDTGKRPQMAAIAELNA DVAIVTDDNPRGEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVAGVRHAFDDAIV AAQALLPRTVLGVRP >Mature_494_residues SRSMALSQLLPDVALPHDVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVLFEPPAPDGLPVPVDAIA VPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLGTLGVGLYGAAVSTGFTTPLVLPTH ALLAQLRDEGAQAVAMEVSSHALDQGRVDAVHFDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTRPGLKAAVVNLDDGFG RTLFASRDPVLRAIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAGALWALDIAPAQ IATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDRLICVFGCGGERDTGKRPQMAAIAELNAD VAIVTDDNPRGEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVAGVRHAFDDAIVA AQALLPRTVLGVRP
Specific function: Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan [H]
COG id: COG0769
COG function: function code M; UDP-N-acetylmuramyl tripeptide synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family. MurE subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786273, Length=473, Percent_Identity=44.6088794926004, Blast_Score=306, Evalue=3e-84,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005761 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: =6.3.2.13 [H]
Molecular weight: Translated: 51494; Mature: 51363
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSMALSQLLPDVALPHDVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGA CCCHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHCCCCC TAVLFEPPAPDGLPVPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQ EEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCHHEEEEEEECCCCCHHHHH LLAQALTLLGTPTGTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVS HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHH SHALDQGRVDAVHFDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTRPGLKAAVVNLDDGF HHHCCCCCEEEEEEEHHHHHHHHHHHHHHCCHHHHHCCHHHEEEECCCCEEEEEECCCCC GRTLFASRDPVLRAIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRF CCEEECCCCCHHEEECCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCC NVDNLLAVAGALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALE CHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEECCCCHHHHH QALSSLRSHAQDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVA HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHEECCCCEEEEECCCCCCCCCCHHHH DILRGFARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVAGVRHAFDDAIV HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH AAQALLPRTVLGVRP HHHHHHHHHHHCCCC >Mature Secondary Structure SRSMALSQLLPDVALPHDVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGA CCHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHCCCCC TAVLFEPPAPDGLPVPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQ EEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCHHEEEEEEECCCCCHHHHH LLAQALTLLGTPTGTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVS HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHH SHALDQGRVDAVHFDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTRPGLKAAVVNLDDGF HHHCCCCCEEEEEEEHHHHHHHHHHHHHHCCHHHHHCCHHHEEEECCCCEEEEEECCCCC GRTLFASRDPVLRAIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRF CCEEECCCCCHHEEECCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCC NVDNLLAVAGALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALE CHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEECCCCHHHHH QALSSLRSHAQDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVA HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHEECCCCEEEEECCCCCCCCCCHHHH DILRGFARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVAGVRHAFDDAIV HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH AAQALLPRTVLGVRP HHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12024217 [H]