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The map label for this gene is nodB [H]

Identifier: 84622646

GI number: 84622646

Start: 1078012

End: 1078803

Strand: Direct

Name: nodB [H]

Synonym: XOO_0989

Alternate gene names: 84622646

Gene position: 1078012-1078803 (Clockwise)

Preceding gene: 84622643

Following gene: 84622650

Centisome position: 21.82

GC content: 69.57

Gene sequence:

>792_bases
ATGGCATCATGCGGCATGACCACGTCGGAAACGCTGTATCGCACCCCTTCTCACCCGTACCGCTGGGTGGGCCTGTTGGC
CCTCTCGCAGGCAGCGGTAGCACTGCTGTGGTGGCACCGGGGCTGGGGCTGGGGGCTGCTGGCGCTGCTGCTGTCGCATG
CGCTGTTCGTGGTCCCGGTGTTTTTGCCGCGCGCGCGGCTGTATGCGCCGGTGCTGGCGCGGTTACCCGGCCGCGCGCCG
CATGTCTGGCTGACCATCGACGATGGCCCGTCCGACGACACCCCGGCCATCCTCGACCTGTTGGATGCATACGACGCCAA
GGCCACGTTCTTCGTGGTGGGCGCACGCGCCCAACAGCGGCCCGAACTGGTGCGCGATATGGTGCGGTGCGGGCATGGCA
TCGGCAATCACAGCCACACCCACCCGCAGGCCTGGTTCTGGGCGCTGGGGCCGCGCCGCATGGCGCAGGAAATCGGTCAG
GCGCAGCGCGTGCTGGCCTGCATCACCGGCCAGGCGCCACGCCTGTACCGCTCAGTGGTCGGCATGACCAACCCCTTTGT
CGCCTCGCAACTGCGTGCGCACGGGCTGACCCGCGTGGCCTGGAGCGCGCGCGGTTTCGACGGCGTGCGTTGCGAGCCAG
ACACCACTATCGCCCGCATCGTGCGCGACCTGCAGCCCGGCGCCATCGTGCTGCTGCACGAAGGCGCTGCACACGGCCAC
AACCTCACCATCCTGCGCGGCGTGCTGGACGCGATGCAGGCGCGCGGATTGGTGGGGCGGCGGCCGGATTAA

Upstream 100 bases:

>100_bases
GGCTGGATTGCAGCAGCGTATCGATACGGGAACGCAGGGCGGGATCGAGGGACATGGCGGCACTTCGGTGGGGGCGTGGA
AGGCGTTCATTCTACGCCGC

Downstream 100 bases:

>100_bases
GAGCGGCTAATAACACGTCGCGAGCAGCTGTCAGGTGGGCGCGGACGGCGCGCTCACAACCGCAGTGGACGCCTGGTACA
TGCCGATTTCGAGCACCGGC

Product: acetylxylan esterase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MASCGMTTSETLYRTPSHPYRWVGLLALSQAAVALLWWHRGWGWGLLALLLSHALFVVPVFLPRARLYAPVLARLPGRAP
HVWLTIDDGPSDDTPAILDLLDAYDAKATFFVVGARAQQRPELVRDMVRCGHGIGNHSHTHPQAWFWALGPRRMAQEIGQ
AQRVLACITGQAPRLYRSVVGMTNPFVASQLRAHGLTRVAWSARGFDGVRCEPDTTIARIVRDLQPGAIVLLHEGAAHGH
NLTILRGVLDAMQARGLVGRRPD

Sequences:

>Translated_263_residues
MASCGMTTSETLYRTPSHPYRWVGLLALSQAAVALLWWHRGWGWGLLALLLSHALFVVPVFLPRARLYAPVLARLPGRAP
HVWLTIDDGPSDDTPAILDLLDAYDAKATFFVVGARAQQRPELVRDMVRCGHGIGNHSHTHPQAWFWALGPRRMAQEIGQ
AQRVLACITGQAPRLYRSVVGMTNPFVASQLRAHGLTRVAWSARGFDGVRCEPDTTIARIVRDLQPGAIVLLHEGAAHGH
NLTILRGVLDAMQARGLVGRRPD
>Mature_262_residues
ASCGMTTSETLYRTPSHPYRWVGLLALSQAAVALLWWHRGWGWGLLALLLSHALFVVPVFLPRARLYAPVLARLPGRAPH
VWLTIDDGPSDDTPAILDLLDAYDAKATFFVVGARAQQRPELVRDMVRCGHGIGNHSHTHPQAWFWALGPRRMAQEIGQA
QRVLACITGQAPRLYRSVVGMTNPFVASQLRAHGLTRVAWSARGFDGVRCEPDTTIARIVRDLQPGAIVLLHEGAAHGHN
LTILRGVLDAMQARGLVGRRPD

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 28955; Mature: 28824

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASCGMTTSETLYRTPSHPYRWVGLLALSQAAVALLWWHRGWGWGLLALLLSHALFVVPV
CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
FLPRARLYAPVLARLPGRAPHVWLTIDDGPSDDTPAILDLLDAYDAKATFFVVGARAQQR
HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCC
PELVRDMVRCGHGIGNHSHTHPQAWFWALGPRRMAQEIGQAQRVLACITGQAPRLYRSVV
HHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GMTNPFVASQLRAHGLTRVAWSARGFDGVRCEPDTTIARIVRDLQPGAIVLLHEGAAHGH
CCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCC
NLTILRGVLDAMQARGLVGRRPD
CHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ASCGMTTSETLYRTPSHPYRWVGLLALSQAAVALLWWHRGWGWGLLALLLSHALFVVPV
CCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
FLPRARLYAPVLARLPGRAPHVWLTIDDGPSDDTPAILDLLDAYDAKATFFVVGARAQQR
HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCC
PELVRDMVRCGHGIGNHSHTHPQAWFWALGPRRMAQEIGQAQRVLACITGQAPRLYRSVV
HHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GMTNPFVASQLRAHGLTRVAWSARGFDGVRCEPDTTIARIVRDLQPGAIVLLHEGAAHGH
CCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCC
NLTILRGVLDAMQARGLVGRRPD
CHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]