Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
---|---|
Accession | NC_007705 |
Length | 4,940,217 |
Click here to switch to the map view.
The map label for this gene is cirA [C]
Identifier: 84622550
GI number: 84622550
Start: 979133
End: 981256
Strand: Direct
Name: cirA [C]
Synonym: XOO_0893
Alternate gene names: 84622550
Gene position: 979133-981256 (Clockwise)
Preceding gene: 84622547
Following gene: 84622552
Centisome position: 19.82
GC content: 62.19
Gene sequence:
>2124_bases ATGACCCCTCGTCTTCTGTCTGCCGCCATCACTGTCGCCCTGCTGGCCGCACCCGTCGGTGCGGCGTTCGCCGCCGATGC CGACTCCGAGCGCACTACCGATCTGGATACGGTCAATGTGATCGCCAAGCTCGAGGCGGCGCGCAATGCCCTGTCACCGG ATATCGGCAGCAGCCAATTCGCCATCACCGCTGACGATATTGATCGCCTGCCGCTTGGCGCTGCGACCCCGCTCAACCAG GTCCTGCTGCAGGCACCGGGCGTGGTGCAGGATTCCTACGGCAGCATCCACGTGCGCGGCGACCACGCCAACCTGCAGTA CCGCGTCAATGGCGTGATGATTCCCGAATCCATCTCCGGCTTCGGCCAGAGCCTGGAGCCGCGCATCATCAAGAACCTCA AGCTGCTCGATGGCGCATTGCCGGCGCAGTTCGGCGACCGCACCGCCGCGGTGGTCGACATCACCACCAAGAGCGGTGCC GAACTCGGCAATGGCGGCAGCGTCGGTATCACCGCCGGCTCATTCGGCACCATCAACCCCAATGCGTCGCTTTGGGGCAG CAGCGGACGTTGGAGCTGGTTCGTCAGCGGCGATTACGACCAGAACAAGAATGGCCTGGAAAACCCGGTCGACAGCCTCA ACCCGATCCATGACAAAAGCCATCAGGGCAAGGGCTTCGCCGATCTGACCTACCTGGTCAACGAGAACACCCGTCTCAGC CTATTGGTCGGCTACGCCAACAACCGCTTCCAGATCCCCAACAATCCCGGGCAGACGCCTGCGTTCGATTATCTGGGCAC CACCGATTTCGATTCGGCGCGCCTGGACGAAAAGCAGCGCGAAAACACCCGCTTCGGCACTTTGGCCCTGCAAGGCACCA TCGGCGACACCAACTATCAGATCTCCGCCGGCCAGCGTTACAGCAGCGTCGCCTTCTCGCCCGACGTCGCCGGCGATCTG ATCTTCAACGGCACCGCCTCGCAAGTGGACCGCAGCAACCGCGCCAATACCGTACAGGCGGACTTCGCAACGCCGTGGGG CGGTTCGCATACGCTGCGCTACGGCCTGTACGGCAACTTCGAGCACGCCATCGCCAGCAACAACTCTTACGTCTTCCCGG CGAACGACGACGGCAGCCAGAGCAGCAACGTGCCGCTGTTCATCCCCGACGGCAGCCGTTTCCATGCCAGTACCTACGCG CTCTACCTGCAGGACGAGTGGAAGATCGGCAACGACTGGACCGTCAATTACGGGCTGCGCGGCGACAAGTACAAGGCGTT CGGCAATACCGAAGGCCAGCTGAGTCCGCGCCTAGGCGTCATCTGGCGCGCCAGCGACAGCACCACCGTACATGCAGGTT ACGCGCGCTACTTCACCCCACCGGCAAGCGAGCTGATCTCCACCAGCGACATCGCGCTGTACGACGGCACCACCAACCAG CAGTCGGCCGGCAACGGCCAGACCACGCCACTGAGCGAGCGTAGCGACTACTACGACCTGGGCATCTCGCAAGTGGTGAC CGATCATTTGACGCTGGGTCTGGACATCTATGACCGCAAGGTCGATCGGCTCCAGGACGAAGGCCAGTTCGGTGCGGCCT ACGTCTATTCCACCTTCAATTATCGCTATGGCCGCATCCGCGGCGCCGAGTTCAGCGCCGACTACACCAACGGGCCGGTC ACGGCGTATTTCAACATTGCCTACAGCAAGGCCATGGGCAAGCGGGTCATCACCAGTCTCTACAACTTTGATCCGGATGC GCTGGCTTACACCTACGACAACTGGATCCATCTGGACCACGATCAGAAGCTGACCTCTTCCGGCGGCATCAACTACGCCT TCAGCGAAGGCAGCAAGGTCGGCCTCAACTATCTGTTCGGCAGCGGCTTACGTACCGACACCGACACCGTGCCCAACGGC GCTTCGCTCCCGTCGTACTTCCAGTTGAATGCCAGCGTTGGCCACGACTTCGACGTCAATACGCACCCGCTGCATGTGCA ATTGGCCGCAGTCAATATCCTCAACCGCAGTTACCAGTTGCGCGATGGCGGCGGCATCGGCGTGTTCGCGCCGCAGTGGG CACCGCGCCGTGGCGTCTATGTGAGCCTGCAGCAAGATTTCTGA
Upstream 100 bases:
>100_bases TCCTTCGAACCATGACTTTCGACCTACGCTAGCGCTCACCAAGAAGTCCAATGTTACAAATTAGTAACGTTTCTTCCCTC ACCCGCCTCGCGAAACTGCC
Downstream 100 bases:
>100_bases TTGCGGCGCAAGGCAGCAGATGGATCGGATGTATCCGGTCCATCCGCTGGCATGCCTACGATGACGACGCATAAAGATGC GACAGGGTCAGGATGCGTGA
Product: colicin I receptor
Products: NA
Alternate protein names: Outer Membrane Receptor For Iron Transport; Nb-Dependent Outer Membrane Receptor Protein; NB Dependent Receptor; Outer Membrane Colicin I Receptor; Hemin Receptor; Outer Membrane Insertion C-Terminal Signal; NB-Dependent Outer Membrane Receptor; Nb-Dependent Receptor; NB Potential Colicin Receptor; Cna Protein B-Type Domain Protein; Colicin I Receptor; NB-Dependent Siderophore Receptor; Ferrichrome-Iron Receptor; Ferrienterochelin/Colicin Outer Membrane Receptor
Number of amino acids: Translated: 707; Mature: 706
Protein sequence:
>707_residues MTPRLLSAAITVALLAAPVGAAFAADADSERTTDLDTVNVIAKLEAARNALSPDIGSSQFAITADDIDRLPLGAATPLNQ VLLQAPGVVQDSYGSIHVRGDHANLQYRVNGVMIPESISGFGQSLEPRIIKNLKLLDGALPAQFGDRTAAVVDITTKSGA ELGNGGSVGITAGSFGTINPNASLWGSSGRWSWFVSGDYDQNKNGLENPVDSLNPIHDKSHQGKGFADLTYLVNENTRLS LLVGYANNRFQIPNNPGQTPAFDYLGTTDFDSARLDEKQRENTRFGTLALQGTIGDTNYQISAGQRYSSVAFSPDVAGDL IFNGTASQVDRSNRANTVQADFATPWGGSHTLRYGLYGNFEHAIASNNSYVFPANDDGSQSSNVPLFIPDGSRFHASTYA LYLQDEWKIGNDWTVNYGLRGDKYKAFGNTEGQLSPRLGVIWRASDSTTVHAGYARYFTPPASELISTSDIALYDGTTNQ QSAGNGQTTPLSERSDYYDLGISQVVTDHLTLGLDIYDRKVDRLQDEGQFGAAYVYSTFNYRYGRIRGAEFSADYTNGPV TAYFNIAYSKAMGKRVITSLYNFDPDALAYTYDNWIHLDHDQKLTSSGGINYAFSEGSKVGLNYLFGSGLRTDTDTVPNG ASLPSYFQLNASVGHDFDVNTHPLHVQLAAVNILNRSYQLRDGGGIGVFAPQWAPRRGVYVSLQQDF
Sequences:
>Translated_707_residues MTPRLLSAAITVALLAAPVGAAFAADADSERTTDLDTVNVIAKLEAARNALSPDIGSSQFAITADDIDRLPLGAATPLNQ VLLQAPGVVQDSYGSIHVRGDHANLQYRVNGVMIPESISGFGQSLEPRIIKNLKLLDGALPAQFGDRTAAVVDITTKSGA ELGNGGSVGITAGSFGTINPNASLWGSSGRWSWFVSGDYDQNKNGLENPVDSLNPIHDKSHQGKGFADLTYLVNENTRLS LLVGYANNRFQIPNNPGQTPAFDYLGTTDFDSARLDEKQRENTRFGTLALQGTIGDTNYQISAGQRYSSVAFSPDVAGDL IFNGTASQVDRSNRANTVQADFATPWGGSHTLRYGLYGNFEHAIASNNSYVFPANDDGSQSSNVPLFIPDGSRFHASTYA LYLQDEWKIGNDWTVNYGLRGDKYKAFGNTEGQLSPRLGVIWRASDSTTVHAGYARYFTPPASELISTSDIALYDGTTNQ QSAGNGQTTPLSERSDYYDLGISQVVTDHLTLGLDIYDRKVDRLQDEGQFGAAYVYSTFNYRYGRIRGAEFSADYTNGPV TAYFNIAYSKAMGKRVITSLYNFDPDALAYTYDNWIHLDHDQKLTSSGGINYAFSEGSKVGLNYLFGSGLRTDTDTVPNG ASLPSYFQLNASVGHDFDVNTHPLHVQLAAVNILNRSYQLRDGGGIGVFAPQWAPRRGVYVSLQQDF >Mature_706_residues TPRLLSAAITVALLAAPVGAAFAADADSERTTDLDTVNVIAKLEAARNALSPDIGSSQFAITADDIDRLPLGAATPLNQV LLQAPGVVQDSYGSIHVRGDHANLQYRVNGVMIPESISGFGQSLEPRIIKNLKLLDGALPAQFGDRTAAVVDITTKSGAE LGNGGSVGITAGSFGTINPNASLWGSSGRWSWFVSGDYDQNKNGLENPVDSLNPIHDKSHQGKGFADLTYLVNENTRLSL LVGYANNRFQIPNNPGQTPAFDYLGTTDFDSARLDEKQRENTRFGTLALQGTIGDTNYQISAGQRYSSVAFSPDVAGDLI FNGTASQVDRSNRANTVQADFATPWGGSHTLRYGLYGNFEHAIASNNSYVFPANDDGSQSSNVPLFIPDGSRFHASTYAL YLQDEWKIGNDWTVNYGLRGDKYKAFGNTEGQLSPRLGVIWRASDSTTVHAGYARYFTPPASELISTSDIALYDGTTNQQ SAGNGQTTPLSERSDYYDLGISQVVTDHLTLGLDIYDRKVDRLQDEGQFGAAYVYSTFNYRYGRIRGAEFSADYTNGPVT AYFNIAYSKAMGKRVITSLYNFDPDALAYTYDNWIHLDHDQKLTSSGGINYAFSEGSKVGLNYLFGSGLRTDTDTVPNGA SLPSYFQLNASVGHDFDVNTHPLHVQLAAVNILNRSYQLRDGGGIGVFAPQWAPRRGVYVSLQQDF
Specific function: Not Yet Known. Postulated To Participate In Iron Transport. Outer Membrane Receptor For Colicins Ia And Ib. [C]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Outer Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 76623; Mature: 76492
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPRLLSAAITVALLAAPVGAAFAADADSERTTDLDTVNVIAKLEAARNALSPDIGSSQF CCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE AITADDIDRLPLGAATPLNQVLLQAPGVVQDSYGSIHVRGDHANLQYRVNGVMIPESISG EEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCEEEEEECCCCEEEEEEEEECCHHHHC FGQSLEPRIIKNLKLLDGALPAQFGDRTAAVVDITTKSGAELGNGGSVGITAGSFGTINP CCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCEECC NASLWGSSGRWSWFVSGDYDQNKNGLENPVDSLNPIHDKSHQGKGFADLTYLVNENTRLS CCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEEECCCCEEE LLVGYANNRFQIPNNPGQTPAFDYLGTTDFDSARLDEKQRENTRFGTLALQGTIGDTNYQ EEEEECCCEEECCCCCCCCCCCCCCCCCCCCHHHCCHHHHCCCEEEEEEEEEEECCCCEE ISAGQRYSSVAFSPDVAGDLIFNGTASQVDRSNRANTVQADFATPWGGSHTLRYGLYGNF EECCCCCCEEEECCCCCCCEEECCCHHHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCC EHAIASNNSYVFPANDDGSQSSNVPLFIPDGSRFHASTYALYLQDEWKIGNDWTVNYGLR HHHEECCCCEEEECCCCCCCCCCCCEEECCCCEEEEEEEEEEEEECEECCCEEEEEECCC GDKYKAFGNTEGQLSPRLGVIWRASDSTTVHAGYARYFTPPASELISTSDIALYDGTTNQ CCCEEECCCCCCCCCCCEEEEEECCCCCEEEECCCEECCCCHHHHCCCCCEEEECCCCCC QSAGNGQTTPLSERSDYYDLGISQVVTDHLTLGLDIYDRKVDRLQDEGQFGAAYVYSTFN CCCCCCCCCCCCCCCCHHHCCHHHHHHHHHEEEEEHHHHHHHHHHCCCCCCEEEEEEECC YRYGRIRGAEFSADYTNGPVTAYFNIAYSKAMGKRVITSLYNFDPDALAYTYDNWIHLDH EEEEEEECCEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEECCEEEECC DQKLTSSGGINYAFSEGSKVGLNYLFGSGLRTDTDTVPNGASLPSYFQLNASVGHDFDVN CCEECCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC THPLHVQLAAVNILNRSYQLRDGGGIGVFAPQWAPRRGVYVSLQQDF CCCEEEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCEEEEEECCC >Mature Secondary Structure TPRLLSAAITVALLAAPVGAAFAADADSERTTDLDTVNVIAKLEAARNALSPDIGSSQF CCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE AITADDIDRLPLGAATPLNQVLLQAPGVVQDSYGSIHVRGDHANLQYRVNGVMIPESISG EEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCEEEEEECCCCEEEEEEEEECCHHHHC FGQSLEPRIIKNLKLLDGALPAQFGDRTAAVVDITTKSGAELGNGGSVGITAGSFGTINP CCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCEECC NASLWGSSGRWSWFVSGDYDQNKNGLENPVDSLNPIHDKSHQGKGFADLTYLVNENTRLS CCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEEECCCCEEE LLVGYANNRFQIPNNPGQTPAFDYLGTTDFDSARLDEKQRENTRFGTLALQGTIGDTNYQ EEEEECCCEEECCCCCCCCCCCCCCCCCCCCHHHCCHHHHCCCEEEEEEEEEEECCCCEE ISAGQRYSSVAFSPDVAGDLIFNGTASQVDRSNRANTVQADFATPWGGSHTLRYGLYGNF EECCCCCCEEEECCCCCCCEEECCCHHHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCC EHAIASNNSYVFPANDDGSQSSNVPLFIPDGSRFHASTYALYLQDEWKIGNDWTVNYGLR HHHEECCCCEEEECCCCCCCCCCCCEEECCCCEEEEEEEEEEEEECEECCCEEEEEECCC GDKYKAFGNTEGQLSPRLGVIWRASDSTTVHAGYARYFTPPASELISTSDIALYDGTTNQ CCCEEECCCCCCCCCCCEEEEEECCCCCEEEECCCEECCCCHHHHCCCCCEEEECCCCCC QSAGNGQTTPLSERSDYYDLGISQVVTDHLTLGLDIYDRKVDRLQDEGQFGAAYVYSTFN CCCCCCCCCCCCCCCCHHHCCHHHHHHHHHEEEEEHHHHHHHHHHCCCCCCEEEEEEECC YRYGRIRGAEFSADYTNGPVTAYFNIAYSKAMGKRVITSLYNFDPDALAYTYDNWIHLDH EEEEEEECCEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEECCEEEECC DQKLTSSGGINYAFSEGSKVGLNYLFGSGLRTDTDTVPNGASLPSYFQLNASVGHDFDVN CCEECCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC THPLHVQLAAVNILNRSYQLRDGGGIGVFAPQWAPRRGVYVSLQQDF CCCEEEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA