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The map label for this gene is yhdW [H]

Identifier: 84622485

GI number: 84622485

Start: 902325

End: 903146

Strand: Direct

Name: yhdW [H]

Synonym: XOO_0828

Alternate gene names: 84622485

Gene position: 902325-903146 (Clockwise)

Preceding gene: 84622484

Following gene: 84622486

Centisome position: 18.26

GC content: 63.14

Gene sequence:

>822_bases
GTGGTGGTCGCGCATCGCGGATGTCATGCCGCAGCGCCACAGCACGGCTTCACCGACACCGCGCCGGAAAACTCGCTGGC
GGCGCTGGAGCGCTGCATCGCCATCGGTGCCGACGTGATGGAAACCGATGTGCGGCGTGCGGCCGATGGCACCTTGGTGA
TGCTGCACGATGCCACCGTGGACCGCACCACCGATGGCAGCGGCAAGTTGTCCGATCTCACGCTGGCCGATCTGCAGAAA
CTGCGCCTGCGAAGCGACGAAGGTGGCGCCCAGGCACCGTTGACCGACCAGCGCGTGGTCACGCTCGAGCAGATGCTCGC
CAAGGCGAAAGGGCACATCCTGCTCAATCTGGACGTCAAGGATGCGATCTACGTGCAAGTGATCGACGCGGTCGCACGCG
CCGGCATGCAGCACCAGGTGATCGTCAAGACCGAAGCCGGCATTTTCACCGCGCCACTGGCTGCGATGCCGCCGTTCAAC
ACCGTGTACTTTTTCCCGATCCTGATCAACGCGCATGGCACTGCCGACCTTGCGGCAATCGCCACTGCGCAGGCCCGCAA
TGCGCATCCGATGGCATTCGAATTGCCAAAGATGGCTGCCGCGCAATTGCCGGCGCTGGTGGCAGTGAGCAGGAAACACA
ATGTGCGGCTGATGGTTAATTCGTTGTGGGAAGGTTTCATCGCCGGTTACGGTGGCGACGCCGATGCCGAGCGCGATCCG
AACAAGGTGTGGGGCCGGATGTACCGCGACGGTGTGTCGATCATCCAGACCGATGCGCCGGAAGCCTTGTTGCGTTATCG
CGCCACCTTGGAAGCGCGTTGA

Upstream 100 bases:

>100_bases
CGCCGCCGTGCTGTGCGCTGCCATCTCGACCACCGCGAGTGCAGCGCCTGCCGGCGTGGCCGCGATCCAGGCGCGCCTGA
CCAACCCGCAAGGCGGCCTC

Downstream 100 bases:

>100_bases
GGCATCGATAGTGCGTGCAGATGCGTTGCCGATGCGCCGAGAGATCGCAGTGCAAGAACCGATCAGGCGCGTGCAGCGAA
CTGGGGGAGATGTGGCCTGG

Product: glycerophosphodiester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MVVAHRGCHAAAPQHGFTDTAPENSLAALERCIAIGADVMETDVRRAADGTLVMLHDATVDRTTDGSGKLSDLTLADLQK
LRLRSDEGGAQAPLTDQRVVTLEQMLAKAKGHILLNLDVKDAIYVQVIDAVARAGMQHQVIVKTEAGIFTAPLAAMPPFN
TVYFFPILINAHGTADLAAIATAQARNAHPMAFELPKMAAAQLPALVAVSRKHNVRLMVNSLWEGFIAGYGGDADAERDP
NKVWGRMYRDGVSIIQTDAPEALLRYRATLEAR

Sequences:

>Translated_273_residues
MVVAHRGCHAAAPQHGFTDTAPENSLAALERCIAIGADVMETDVRRAADGTLVMLHDATVDRTTDGSGKLSDLTLADLQK
LRLRSDEGGAQAPLTDQRVVTLEQMLAKAKGHILLNLDVKDAIYVQVIDAVARAGMQHQVIVKTEAGIFTAPLAAMPPFN
TVYFFPILINAHGTADLAAIATAQARNAHPMAFELPKMAAAQLPALVAVSRKHNVRLMVNSLWEGFIAGYGGDADAERDP
NKVWGRMYRDGVSIIQTDAPEALLRYRATLEAR
>Mature_273_residues
MVVAHRGCHAAAPQHGFTDTAPENSLAALERCIAIGADVMETDVRRAADGTLVMLHDATVDRTTDGSGKLSDLTLADLQK
LRLRSDEGGAQAPLTDQRVVTLEQMLAKAKGHILLNLDVKDAIYVQVIDAVARAGMQHQVIVKTEAGIFTAPLAAMPPFN
TVYFFPILINAHGTADLAAIATAQARNAHPMAFELPKMAAAQLPALVAVSRKHNVRLMVNSLWEGFIAGYGGDADAERDP
NKVWGRMYRDGVSIIQTDAPEALLRYRATLEAR

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=125, Percent_Identity=40, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 29397; Mature: 29397

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVAHRGCHAAAPQHGFTDTAPENSLAALERCIAIGADVMETDVRRAADGTLVMLHDATV
CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCC
DRTTDGSGKLSDLTLADLQKLRLRSDEGGAQAPLTDQRVVTLEQMLAKAKGHILLNLDVK
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCC
DAIYVQVIDAVARAGMQHQVIVKTEAGIFTAPLAAMPPFNTVYFFPILINAHGTADLAAI
HHHHHHHHHHHHHCCCCEEEEEEECCCEEECCHHCCCCCCEEEEEEEEEECCCCCHHHHH
ATAQARNAHPMAFELPKMAAAQLPALVAVSRKHNVRLMVNSLWEGFIAGYGGDADAERDP
HHHHCCCCCCCEEECHHHHHHHCCHHEEECCCCCEEEHHHHHHHHHHHCCCCCCCCCCCH
NKVWGRMYRDGVSIIQTDAPEALLRYRATLEAR
HHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MVVAHRGCHAAAPQHGFTDTAPENSLAALERCIAIGADVMETDVRRAADGTLVMLHDATV
CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCC
DRTTDGSGKLSDLTLADLQKLRLRSDEGGAQAPLTDQRVVTLEQMLAKAKGHILLNLDVK
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCC
DAIYVQVIDAVARAGMQHQVIVKTEAGIFTAPLAAMPPFNTVYFFPILINAHGTADLAAI
HHHHHHHHHHHHHCCCCEEEEEEECCCEEECCHHCCCCCCEEEEEEEEEECCCCCHHHHH
ATAQARNAHPMAFELPKMAAAQLPALVAVSRKHNVRLMVNSLWEGFIAGYGGDADAERDP
HHHHCCCCCCCEEECHHHHHHHCCHHEEECCCCCEEEHHHHHHHHHHHCCCCCCCCCCCH
NKVWGRMYRDGVSIIQTDAPEALLRYRATLEAR
HHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]