Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
---|---|
Accession | NC_007705 |
Length | 4,940,217 |
Click here to switch to the map view.
The map label for this gene is lptG [H]
Identifier: 84622419
GI number: 84622419
Start: 820495
End: 821601
Strand: Direct
Name: lptG [H]
Synonym: XOO_0762
Alternate gene names: 84622419
Gene position: 820495-821601 (Clockwise)
Preceding gene: 84622418
Following gene: 84622421
Centisome position: 16.61
GC content: 63.32
Gene sequence:
>1107_bases ATGAAGCTGACGCCGCGGGTCCATGATTGGTATGTCGGCCGGGTGGTGCTGTCCACCGTGCTGCTGACGTGGGCGGTGCT GTTGGGGCTTGACCTGGTCAACGCCTTTGCCAGCGAAGCCAAGGACATTGGTCAGGGCAGTTACACCTTTGGCCATGCGG TGGCTTACGTGGCCTACACCGTGCCGCGCCGGGCCTACACCTTGTTCCCCACTGCAGCGGTGATTGGCGCGCTGATGGGC CTGGGCCAGTTGGCCGCCACCTCCGAGCTGACCGCGCTGCGCGCGTTGGGCGTGTCGCGCAAACGCATGTCCGCCTCGGT AGTCGCAGCGATGGCGCTGCTGACCGCCAGCATGGTGATCAGTGGCGAAACCATCGGGCCGTGGGCACAGAACCAGGCCG ACACGCTCAAGGCCAGTGCCCGCTACAACAGCGATATGGCCGCTTCGCTCTATGCCGGCCTGTGGGCACGTGAGGGCGAC ACCTTTCTTAACGCCTTGAGTGGTGAAGAGAAGTTGCTCGACGGCGGCGATACCGCACTGGATCTGCACGATGTGCGGCT GTATCACCTCGACTCCAGCGGCAGAATGCAGCAGCTGACCTATGCGTCGGTGGCCGAACATCGCGATGGCCGTTGGACTC TGCGCCAGGTACGTCGCGACACCTTCCAGGAACGCTCGGTGCAGCGCGAAACCTTCCCCGAGTTGCCGTGGCAATCGCAA CTGAATCCGGCAGCGCTGGCCGCTGGCCTCGCCAAGCCGCGCAATCTGTCCGCTCATGATCTGGAGCAGAGCATCGAATA CCGCAGCCGCAATGGATTGGATGCGCGCGATTACGAAGATCAGTACTGGAGCCGTTGGTTCTATCCGCTCAACGTGCTGG CGCTGTGCATGGCGGCAATCCCGTTCTCGTTCGGTTCGCTGCGGAGCGGTGGCTTGGGCAAGCGTCTGTTCCTGGGCATC CTGTTCGCGCTGGGCTTCTGGCTGCTGCAGCTGTTTTTCGGCCGCATGGCCGGCGCGCTCAAGCTCGATTACCGCATCGC CTATGCGCTACCGCCGATGGTGATGCTGGGTGTATCGGCGTGGTTGTTCCGCAGGCGTAGTAGCTGA
Upstream 100 bases:
>100_bases CGGCCGCGCTGGGCCTGTGGTGGCTGACGCTGCCGCTGCTGGCAGTGGCGGTGTGGGCGTATGCGCGCGATGGCCGCGTG CGTCGGCCGAGGGCGCGCGC
Downstream 100 bases:
>100_bases CCGCATGCGGCGGGTGAGCATGGTGGGAGTGGCGCTCTGCCTGCTGTATCTGGCGGCGACTGCGTTTTGCGTGTGGGGAG CGCTTAGTGCACAGGGCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MKLTPRVHDWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKDIGQGSYTFGHAVAYVAYTVPRRAYTLFPTAAVIGALMG LGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPWAQNQADTLKASARYNSDMAASLYAGLWAREGD TFLNALSGEEKLLDGGDTALDLHDVRLYHLDSSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQ LNPAALAAGLAKPRNLSAHDLEQSIEYRSRNGLDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGSLRSGGLGKRLFLGI LFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRRSS
Sequences:
>Translated_368_residues MKLTPRVHDWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKDIGQGSYTFGHAVAYVAYTVPRRAYTLFPTAAVIGALMG LGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPWAQNQADTLKASARYNSDMAASLYAGLWAREGD TFLNALSGEEKLLDGGDTALDLHDVRLYHLDSSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQ LNPAALAAGLAKPRNLSAHDLEQSIEYRSRNGLDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGSLRSGGLGKRLFLGI LFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRRSS >Mature_368_residues MKLTPRVHDWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKDIGQGSYTFGHAVAYVAYTVPRRAYTLFPTAAVIGALMG LGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPWAQNQADTLKASARYNSDMAASLYAGLWAREGD TFLNALSGEEKLLDGGDTALDLHDVRLYHLDSSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQ LNPAALAAGLAKPRNLSAHDLEQSIEYRSRNGLDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGSLRSGGLGKRLFLGI LFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRRSS
Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]
COG id: COG0795
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptF/lptG family [H]
Homologues:
Organism=Escherichia coli, GI87082400, Length=369, Percent_Identity=31.7073170731707, Blast_Score=150, Evalue=2e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005495 [H]
Pfam domain/function: PF03739 YjgP_YjgQ [H]
EC number: NA
Molecular weight: Translated: 40759; Mature: 40759
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLTPRVHDWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKDIGQGSYTFGHAVAYVAYT CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH VPRRAYTLFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVI CCCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH SGETIGPWAQNQADTLKASARYNSDMAASLYAGLWAREGDTFLNALSGEEKLLDGGDTAL CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHCCCCCCEE DLHDVRLYHLDSSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQ EEEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC LNPAALAAGLAKPRNLSAHDLEQSIEYRSRNGLDARDYEDQYWSRWFYPLNVLALCMAAI CCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH PFSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHCCHHHHHHHHH WLFRRRSS HHHHHCCC >Mature Secondary Structure MKLTPRVHDWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKDIGQGSYTFGHAVAYVAYT CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH VPRRAYTLFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVI CCCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH SGETIGPWAQNQADTLKASARYNSDMAASLYAGLWAREGDTFLNALSGEEKLLDGGDTAL CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHCCCCCCEE DLHDVRLYHLDSSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQ EEEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC LNPAALAAGLAKPRNLSAHDLEQSIEYRSRNGLDARDYEDQYWSRWFYPLNVLALCMAAI CCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH PFSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHCCHHHHHHHHH WLFRRRSS HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]