Click here to switch to the map view.

The map label for this gene is lptF [H]

Identifier: 84622418

GI number: 84622418

Start: 819416

End: 820498

Strand: Direct

Name: lptF [H]

Synonym: XOO_0761

Alternate gene names: 84622418

Gene position: 819416-820498 (Clockwise)

Preceding gene: 84622408

Following gene: 84622419

Centisome position: 16.59

GC content: 65.84

Gene sequence:

>1083_bases
ATGCCGAAGCTCGATCGATACCTGCTTAGCGATTTCACCCAGAGCTTCCTGGCCACCTTGATTGTGCTGCTGGTCGTCAG
CGTCGGCGGTGTGCTGGTCGATATCCTCGGCAATATCGCCGATGGCCGCATCCCGGCGCGCTTGCTGCTGTCGCAGGTGG
GGCTGCAATTCGTGGCCTACCTGCCCATCATCCTGCCGCTGGCATTAATGCTGGGCTTGCTGCTGGCACTGGCGCGGCTG
TACCGCGATTCAGAAATGGCCGTCATTACCGCCATTGGTGTCGGACCCACGCGCATGTTGCGCCCGCTATTGATGCTGGT
GGTACCGGTGGTGGTGGTCATCGGGCTGTGCTCGCTGTGGCTGGGCCCCTGGGCGAGCCGCACCGCCGAAGCGATGCTGG
AAGATGCCAACCGCAGCGTGCTGATGGCCGGCCTGGAATCGGGCCAGTTCACGCCGTTGTCCGATGGTGGCGTGGTGTAC
ATGCAGACGATCTCTGCCGACGGCAAGGGCCTGGGCAAGATCTTCCTGCAGCGCCAACAGAACGACCGCATCGATGTGGT
CACCGCCGACCGCGGCGCCCTGTTCTTCGAAGGCAAGACCGACCGTTACCTGCACCTGGACGATGGCTACCGTACCGAGG
GTCCGGCCGGCGGTGCGACGCTGGACTATCGCTTGATGAAGTTCGCCAGCAGCGACATTGCCTTGCCCGACCGCACCCGC
TTGCACGATGCCAACGACCCGGAAGTGATGTGGACCACACAGTTGCTGTCCGACGAGCGGCCCGCCGCACGCGCGCAGCT
GCATGAGCGCCTGGCACCGCCGCTGCTGGCGCTGGCGTTTGCAATGCTGACCTTGCCGCTGTCGCGCAGCGCGCCGCGGC
AGCAGCGCTACGGACGCATCATGCTGGCGTTCCTGGCCTACATGGTCGGCACCAATCTGATGATCGTCGGCACCCAGTGG
ATCGCCAACGGCAAGGCCCCGGCCGCGCTGGGCCTGTGGTGGCTGACGCTGCCGCTGCTGGCAGTGGCGGTGTGGGCGTA
TGCGCGCGATGGCCGCGTGCGTCGGCCGAGGGCGCGCGCATGA

Upstream 100 bases:

>100_bases
ATTCCGTAGGCAAATCCGTACAATCGCGGGCTGTTTACGCCAACCTAACTAGGCTGGCGGCGCCGCGAACGAATTCGAGA
GTTTAAAACAAGCCCACCCC

Downstream 100 bases:

>100_bases
AGCTGACGCCGCGGGTCCATGATTGGTATGTCGGCCGGGTGGTGCTGTCCACCGTGCTGCTGACGTGGGCGGTGCTGTTG
GGGCTTGACCTGGTCAACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAYLPIILPLALMLGLLLALARL
YRDSEMAVITAIGVGPTRMLRPLLMLVVPVVVVIGLCSLWLGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSDGGVVY
MQTISADGKGLGKIFLQRQQNDRIDVVTADRGALFFEGKTDRYLHLDDGYRTEGPAGGATLDYRLMKFASSDIALPDRTR
LHDANDPEVMWTTQLLSDERPAARAQLHERLAPPLLALAFAMLTLPLSRSAPRQQRYGRIMLAFLAYMVGTNLMIVGTQW
IANGKAPAALGLWWLTLPLLAVAVWAYARDGRVRRPRARA

Sequences:

>Translated_360_residues
MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAYLPIILPLALMLGLLLALARL
YRDSEMAVITAIGVGPTRMLRPLLMLVVPVVVVIGLCSLWLGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSDGGVVY
MQTISADGKGLGKIFLQRQQNDRIDVVTADRGALFFEGKTDRYLHLDDGYRTEGPAGGATLDYRLMKFASSDIALPDRTR
LHDANDPEVMWTTQLLSDERPAARAQLHERLAPPLLALAFAMLTLPLSRSAPRQQRYGRIMLAFLAYMVGTNLMIVGTQW
IANGKAPAALGLWWLTLPLLAVAVWAYARDGRVRRPRARA
>Mature_359_residues
PKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAYLPIILPLALMLGLLLALARLY
RDSEMAVITAIGVGPTRMLRPLLMLVVPVVVVIGLCSLWLGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSDGGVVYM
QTISADGKGLGKIFLQRQQNDRIDVVTADRGALFFEGKTDRYLHLDDGYRTEGPAGGATLDYRLMKFASSDIALPDRTRL
HDANDPEVMWTTQLLSDERPAARAQLHERLAPPLLALAFAMLTLPLSRSAPRQQRYGRIMLAFLAYMVGTNLMIVGTQWI
ANGKAPAALGLWWLTLPLLAVAVWAYARDGRVRRPRARA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=346, Percent_Identity=32.3699421965318, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 39459; Mature: 39328

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPTRMLRPLLMLVVPVVVVIGLCSLW
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
LGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSDGGVVYMQTISADGKGLGKIFLQRQQ
HCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHCC
NDRIDVVTADRGALFFEGKTDRYLHLDDGYRTEGPAGGATLDYRLMKFASSDIALPDRTR
CCCEEEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
LHDANDPEVMWTTQLLSDERPAARAQLHERLAPPLLALAFAMLTLPLSRSAPRQQRYGRI
CCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
MLAFLAYMVGTNLMIVGTQWIANGKAPAALGLWWLTLPLLAVAVWAYARDGRVRRPRARA
HHHHHHHHHCCCEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPTRMLRPLLMLVVPVVVVIGLCSLW
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
LGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSDGGVVYMQTISADGKGLGKIFLQRQQ
HCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHCC
NDRIDVVTADRGALFFEGKTDRYLHLDDGYRTEGPAGGATLDYRLMKFASSDIALPDRTR
CCCEEEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
LHDANDPEVMWTTQLLSDERPAARAQLHERLAPPLLALAFAMLTLPLSRSAPRQQRYGRI
CCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
MLAFLAYMVGTNLMIVGTQWIANGKAPAALGLWWLTLPLLAVAVWAYARDGRVRRPRARA
HHHHHHHHHCCCEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]