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The map label for this gene is yagA [C]

Identifier: 84622225

GI number: 84622225

Start: 617176

End: 617661

Strand: Direct

Name: yagA [C]

Synonym: XOO_0568

Alternate gene names: 84622225

Gene position: 617176-617661 (Clockwise)

Preceding gene: 84622224

Following gene: 84622227

Centisome position: 12.49

GC content: 60.91

Gene sequence:

>486_bases
ATGGACGTCGTGTTCGACCGCACCGCCGAAGGCAGGGCAATCAAATGCCTGGTGATCGTGGACGACACAACCCATGAAGC
GGTCGCCATCGACGTGGAGCGTGCGATCTCGGGACACGGCGTTGTGCGCGTGCTGGATCGGTTGGCACACAGTCGTGGCC
TGCCGAAGATGATCCGCACCGACAACGGCAAGGAGTTCTGTGGCAAGGCCATGGTCGCCTGGGCGCATGCCAATGGTGTG
CAGCTACGCCAGATCCAGCCTGGCAAGCCGAACCAGAATGCCTACGTCGAATCCTTCAACGGCCGGCTACGCGACGAATG
CCTCAACGAACACTGGTTCCCAACGCTGCTGCATGCGCGCACCGAGATCGAACGCTGGCGCCGCGAATACAACGAACACC
GCCCCAAAAAAACAATCGGCGCAATGACGCCGGCGGCCTATGCCCAGCAGTTGGCCAATAGCGATATCATCACCCCCGGA
CTCTAA

Upstream 100 bases:

>100_bases
CGAGCAGCAGCTGCAAGTCCGGCGCCGCACGCGTAAAAAGGTGCCGGTAGGCGAGCGTGCACCGTTGCTGCGGCCCACCA
AGGCCAACCCGGTGTGATCC

Downstream 100 bases:

>100_bases
ACCCGACTGCTACTCAGGATGGGGGGACATCGCAGGCGGGCGGATCCTCGATCCGTTCGCAGGCAGCGGCACGACGCTTG
TGGCGGCCGAACTGGAAGGC

Product: ISXoo3 transposase orfB

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MDVVFDRTAEGRAIKCLVIVDDTTHEAVAIDVERAISGHGVVRVLDRLAHSRGLPKMIRTDNGKEFCGKAMVAWAHANGV
QLRQIQPGKPNQNAYVESFNGRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKTIGAMTPAAYAQQLANSDIITPG
L

Sequences:

>Translated_161_residues
MDVVFDRTAEGRAIKCLVIVDDTTHEAVAIDVERAISGHGVVRVLDRLAHSRGLPKMIRTDNGKEFCGKAMVAWAHANGV
QLRQIQPGKPNQNAYVESFNGRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKTIGAMTPAAYAQQLANSDIITPG
L
>Mature_161_residues
MDVVFDRTAEGRAIKCLVIVDDTTHEAVAIDVERAISGHGVVRVLDRLAHSRGLPKMIRTDNGKEFCGKAMVAWAHANGV
QLRQIQPGKPNQNAYVESFNGRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKTIGAMTPAAYAQQLANSDIITPG
L

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 18167; Mature: 18167

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVVFDRTAEGRAIKCLVIVDDTTHEAVAIDVERAISGHGVVRVLDRLAHSRGLPKMIRT
CCCCCCCCCCCCEEEEEEEEECCCCCEEEEEHHHHHCCCHHHHHHHHHHHHCCCCHHHCC
DNGKEFCGKAMVAWAHANGVQLRQIQPGKPNQNAYVESFNGRLRDECLNEHWFPTLLHAR
CCCHHHHHHHHHEEECCCCEEEEEECCCCCCCCCHHHHHCCHHHHHHHCCCCHHHHHHHH
TEIERWRREYNEHRPKKTIGAMTPAAYAQQLANSDIITPGL
HHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDVVFDRTAEGRAIKCLVIVDDTTHEAVAIDVERAISGHGVVRVLDRLAHSRGLPKMIRT
CCCCCCCCCCCCEEEEEEEEECCCCCEEEEEHHHHHCCCHHHHHHHHHHHHCCCCHHHCC
DNGKEFCGKAMVAWAHANGVQLRQIQPGKPNQNAYVESFNGRLRDECLNEHWFPTLLHAR
CCCHHHHHHHHHEEECCCCEEEEEECCCCCCCCCHHHHHCCHHHHHHHCCCCHHHHHHHH
TEIERWRREYNEHRPKKTIGAMTPAAYAQQLANSDIITPGL
HHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]