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The map label for this gene is ychF [C]

Identifier: 84489469

GI number: 84489469

Start: 770267

End: 771364

Strand: Direct

Name: ychF [C]

Synonym: Msp_0660

Alternate gene names: 84489469

Gene position: 770267-771364 (Clockwise)

Preceding gene: 84489467

Following gene: 84489471

Centisome position: 43.58

GC content: 30.24

Gene sequence:

>1098_bases
ATGTCAGCAGCAGAGGATCGAATCAAACAGATTGAAGAGGAGATAAAAAATACTCAGAAAAATAAGGCAACATCACACCA
TATAGGTAAATTAAAAGCACAAATTGCTCAACTTAAGGAAAAAATTGAAAAACGTAATAGTTCTGGTACTAAGGGTGAAG
GTTTTCTTGTAAAAAAAAGTGGTGATTCAACTGCAGTACTTCTTGGTTTTCCATCTGTTGGAAAATCAACAATCCTAAAT
TATTTAACAAATGCAAATTCCAAAGTTGGAGCATATGAATTCACAACATTAGATATAGTTCCAGGTATCATGGAATATGA
AGATGCAAAAATTCAGATATTAGATATTCCAGGTATTATTAAAGGTGCATCAAAGGGAAAAGGAAAGGGTAGGGAAATTT
TATCTGCTACTCGTAATGCAGACCTAATTATTATGGTATTGGATGTATTTCAACCAGAACATATGGATGTAATTCTAGAG
GAAGTTCGTAATATTGGTGTTAGACCTAATGAAAAGAAACCTAAAGTAAAAGTATCTAAGAAAAAGATGGGTGGTTTAAG
TATAGTATCTACTGTTGAATTAACACATATAGATGAAAAAACTATACATTCAATATTAAGTGAATATGGTATTCATAGTG
CAGATGTTGTATTAAGAGAAGATGTTACAATAGATAGATTTATTGATGCTATGGAACCAAACAGAGCATATATTCCAATG
ACTATTGTTGTAAATAAAATTGATATTGCAACAGAAGAACATTTAAATAATCTTAAGAAAAAATTACCTAATGCATTATT
TGTATCTGCTGATGATGGTATTATGATGAATGAATTAAAGGAAAGAATATTTGTAGATCTTGATTTAATCCGTTTATATC
TTAAACCTCAAGGTAAAAAAGCAGATATGGACGAACCATTGATTATAAGAAAGGGTTCAACTATAGAGGATGTTGCTAGA
AAATTACATAGGGACTTTGTGAAAAATTTCAAGTATGCAAAGGTATGGGGAGAATCTGTAAAATTTCCAGGTCAAAAAGT
TGGACTTGATCATGTATTAAGTGATCATGATATTGTAAGGATTATTATTAAGAAATAA

Upstream 100 bases:

>100_bases
TATATATAAACCTGTAGAACAAGGGAGATAGCTTAGTAATTCTACTATCAAATATAATAGTATAGCCTAAGAATTGTTCA
AAAATATAGTGTGAAAAATA

Downstream 100 bases:

>100_bases
TTTTTCTTATGATATTTATTCCTTTTTTTTTAAATTAAATTTAATGTTTTTAATGTATTTTTTAGTGTTTTAGTACTACA
ATATATATCCTAGTTTTTCA

Product: GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MSAAEDRIKQIEEEIKNTQKNKATSHHIGKLKAQIAQLKEKIEKRNSSGTKGEGFLVKKSGDSTAVLLGFPSVGKSTILN
YLTNANSKVGAYEFTTLDIVPGIMEYEDAKIQILDIPGIIKGASKGKGKGREILSATRNADLIIMVLDVFQPEHMDVILE
EVRNIGVRPNEKKPKVKVSKKKMGGLSIVSTVELTHIDEKTIHSILSEYGIHSADVVLREDVTIDRFIDAMEPNRAYIPM
TIVVNKIDIATEEHLNNLKKKLPNALFVSADDGIMMNELKERIFVDLDLIRLYLKPQGKKADMDEPLIIRKGSTIEDVAR
KLHRDFVKNFKYAKVWGESVKFPGQKVGLDHVLSDHDIVRIIIKK

Sequences:

>Translated_365_residues
MSAAEDRIKQIEEEIKNTQKNKATSHHIGKLKAQIAQLKEKIEKRNSSGTKGEGFLVKKSGDSTAVLLGFPSVGKSTILN
YLTNANSKVGAYEFTTLDIVPGIMEYEDAKIQILDIPGIIKGASKGKGKGREILSATRNADLIIMVLDVFQPEHMDVILE
EVRNIGVRPNEKKPKVKVSKKKMGGLSIVSTVELTHIDEKTIHSILSEYGIHSADVVLREDVTIDRFIDAMEPNRAYIPM
TIVVNKIDIATEEHLNNLKKKLPNALFVSADDGIMMNELKERIFVDLDLIRLYLKPQGKKADMDEPLIIRKGSTIEDVAR
KLHRDFVKNFKYAKVWGESVKFPGQKVGLDHVLSDHDIVRIIIKK
>Mature_364_residues
SAAEDRIKQIEEEIKNTQKNKATSHHIGKLKAQIAQLKEKIEKRNSSGTKGEGFLVKKSGDSTAVLLGFPSVGKSTILNY
LTNANSKVGAYEFTTLDIVPGIMEYEDAKIQILDIPGIIKGASKGKGKGREILSATRNADLIIMVLDVFQPEHMDVILEE
VRNIGVRPNEKKPKVKVSKKKMGGLSIVSTVELTHIDEKTIHSILSEYGIHSADVVLREDVTIDRFIDAMEPNRAYIPMT
IVVNKIDIATEEHLNNLKKKLPNALFVSADDGIMMNELKERIFVDLDLIRLYLKPQGKKADMDEPLIIRKGSTIEDVARK
LHRDFVKNFKYAKVWGESVKFPGQKVGLDHVLSDHDIVRIIIKK

Specific function: Unknown

COG id: COG1163

COG function: function code R; Predicted GTPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI4557537, Length=361, Percent_Identity=44.3213296398892, Blast_Score=328, Evalue=3e-90,
Organism=Homo sapiens, GI4758796, Length=368, Percent_Identity=45.6521739130435, Blast_Score=316, Evalue=2e-86,
Organism=Homo sapiens, GI24308117, Length=90, Percent_Identity=41.1111111111111, Blast_Score=75, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI71981008, Length=363, Percent_Identity=43.801652892562, Blast_Score=327, Evalue=4e-90,
Organism=Caenorhabditis elegans, GI17555344, Length=361, Percent_Identity=43.4903047091413, Blast_Score=290, Evalue=6e-79,
Organism=Saccharomyces cerevisiae, GI6321612, Length=365, Percent_Identity=44.1095890410959, Blast_Score=304, Evalue=1e-83,
Organism=Saccharomyces cerevisiae, GI6319281, Length=370, Percent_Identity=41.8918918918919, Blast_Score=293, Evalue=4e-80,
Organism=Saccharomyces cerevisiae, GI6321962, Length=101, Percent_Identity=38.6138613861386, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21356473, Length=360, Percent_Identity=43.8888888888889, Blast_Score=338, Evalue=4e-93,
Organism=Drosophila melanogaster, GI17981711, Length=368, Percent_Identity=45.1086956521739, Blast_Score=306, Evalue=2e-83,
Organism=Drosophila melanogaster, GI20129375, Length=149, Percent_Identity=34.2281879194631, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24585318, Length=93, Percent_Identity=38.7096774193548, Blast_Score=73, Evalue=3e-13,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006074
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR005225
- InterPro:   IPR004095 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF02824 TGS [H]

EC number: NA

Molecular weight: Translated: 40869; Mature: 40738

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS00905 GTP1_OBG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAEDRIKQIEEEIKNTQKNKATSHHIGKLKAQIAQLKEKIEKRNSSGTKGEGFLVKKS
CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
GDSTAVLLGFPSVGKSTILNYLTNANSKVGAYEFTTLDIVPGIMEYEDAKIQILDIPGII
CCCEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEEHHHCCCCCCCCCCEEEEEECCCCE
KGASKGKGKGREILSATRNADLIIMVLDVFQPEHMDVILEEVRNIGVRPNEKKPKVKVSK
ECCCCCCCCCHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEH
KKMGGLSIVSTVELTHIDEKTIHSILSEYGIHSADVVLREDVTIDRFIDAMEPNRAYIPM
HHCCCEEEEEEEEEECCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCCEEEEE
TIVVNKIDIATEEHLNNLKKKLPNALFVSADDGIMMNELKERIFVDLDLIRLYLKPQGKK
EEEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHEECCCCCC
ADMDEPLIIRKGSTIEDVARKLHRDFVKNFKYAKVWGESVKFPGQKVGLDHVLSDHDIVR
CCCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHCCHHHHCCCCCEEE
IIIKK
EEEEC
>Mature Secondary Structure 
SAAEDRIKQIEEEIKNTQKNKATSHHIGKLKAQIAQLKEKIEKRNSSGTKGEGFLVKKS
CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
GDSTAVLLGFPSVGKSTILNYLTNANSKVGAYEFTTLDIVPGIMEYEDAKIQILDIPGII
CCCEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEEHHHCCCCCCCCCCEEEEEECCCCE
KGASKGKGKGREILSATRNADLIIMVLDVFQPEHMDVILEEVRNIGVRPNEKKPKVKVSK
ECCCCCCCCCHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEH
KKMGGLSIVSTVELTHIDEKTIHSILSEYGIHSADVVLREDVTIDRFIDAMEPNRAYIPM
HHCCCEEEEEEEEEECCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCCEEEEE
TIVVNKIDIATEEHLNNLKKKLPNALFVSADDGIMMNELKERIFVDLDLIRLYLKPQGKK
EEEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHEECCCCCC
ADMDEPLIIRKGSTIEDVARKLHRDFVKNFKYAKVWGESVKFPGQKVGLDHVLSDHDIVR
CCCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHCCHHHHCCCCCEEE
IIIKK
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]