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The map label for this gene is rtcB [C]

Identifier: 84489450

GI number: 84489450

Start: 749108

End: 750556

Strand: Direct

Name: rtcB [C]

Synonym: Msp_0641

Alternate gene names: 84489450

Gene position: 749108-750556 (Clockwise)

Preceding gene: 84489446

Following gene: 84489451

Centisome position: 42.38

GC content: 33.13

Gene sequence:

>1449_bases
ATGGTAGGAAAAGGAGATTTAGAAAAAGTTAGAGATTGTGTATATGAAATTCCATCATCAGCAAGAAAAGATATGAGAGT
TCCTGCTAGAATTTATTTAGATGAAGAATCAATAAAAACATTAGAAGATGGAGCAATTGAACAAGTAGCTAATGTAGCAT
GTCTTGAAGGAATACAGAAAAGATCAATAGGATTACCAGATATTCACTTTGGATATGGATTTAGTATTGGAGGAGTAGCA
GCATTCTCTGAAATTAATGGAGTAGTAAGTCCTGGAGGAGTAGGTTTTGATATTAACTGTGGAGTAAGACTACTAAAAAC
AAATCTTACAAAACAAGACATACAACCTCATCTTAAAGATCTTGTTAATGAATTATTTAATAAAGTACCATCAGGTCTTG
GAAGTAATGGTATAAAACACTTAAAAGAATCTGAAATAGATGATGTACTAGAAAATGGTGCTAAATGGGCAGTAGAAAAT
GGATTTGGATGGGAAGAAGATCTTAAATTCCTTGAAGAAAATGGTTGTATGGAAGGAGCAGATGCTAGTTTAGTAAGTAC
AAAGGCAAAAAGAAGAGGTATACCACAGCTTGGATCACTTGGAAGTGGAAATCATTTCCTAGAAATTCAATCAATAGGTG
ATATATATGATGAAGAAATTGCAAAAGCATATGGTCTAGAAAAGGATCAAGTAGTAGTATTAATACATACAGGTTCTCGT
GGATGTGGATATCAAATCTGTGCAGATAATCTACGTGAAATGGATAAAACTGCAAAAAGATTAAAATTAAATCTACCAGA
TAGACAACTTGCATGTGCACCAATAGATTCTGATGAAGGACAAAACTACTTAAAAGCAATGGCTGCAGGTGCAAACTATG
CATGGACAAATAGACAAATGATTCAACATTGGGTAAGAGAATCATTTGAAAATATTTTAAAACAAGATGCAGAATCATTA
GGTTTAAATGTATTATATGATGTAGCACATAACATAATTAAAAAAGAACAACATAAAATTGGTAAAATTAATAGAAATAT
GTATGTACATCGTAAAGGAGCAACACGTGCATTTGGTCCTGGAAGAAAAGAAATTCCACAAGAATATAGAAGTGTAGGTC
AACCTGTACTCATACCAGGTACTATGGGAACTTCATCCTATATATTAGCTGGAACTGAAACTGCAATGGATGAAACATTT
GGGTCTACAGCACACGGAGCTGGAAGAGTACTTAGTAGGTCTGGTGCAAAACGTGAATTTACTCCAGAAGAAATATCAAA
AGATTTAGCAGATAAAGGAATTATTCTTAAAGCAAATTCACAACCAGTTATTGCTGAAGAAGCACCTAATGCATATAAAG
ATGTTGATTCAGTTGTAAAAACTGCTGATAAAACAGGTATAAGTAAACTTGTTGCTCAAATGAAACCATTAGGTGTAATT
AAGGGGTAA

Upstream 100 bases:

>100_bases
ATTAACATAAAGTTAAAAAAAATTAAATATTTATTTTAACATTTAATAATTCACAACATTATATAATATAATTTTAAATA
AAGACAAAGAGTGTGAAAAA

Downstream 100 bases:

>100_bases
ACTTAATGATTGGTATTATTGGTGGAACAGGAACAAAAGCATTACTTGAAACATACTCTATTGTAGATAAAAAAGATGTT
AAGACAGAGTATGGACAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MVGKGDLEKVRDCVYEIPSSARKDMRVPARIYLDEESIKTLEDGAIEQVANVACLEGIQKRSIGLPDIHFGYGFSIGGVA
AFSEINGVVSPGGVGFDINCGVRLLKTNLTKQDIQPHLKDLVNELFNKVPSGLGSNGIKHLKESEIDDVLENGAKWAVEN
GFGWEEDLKFLEENGCMEGADASLVSTKAKRRGIPQLGSLGSGNHFLEIQSIGDIYDEEIAKAYGLEKDQVVVLIHTGSR
GCGYQICADNLREMDKTAKRLKLNLPDRQLACAPIDSDEGQNYLKAMAAGANYAWTNRQMIQHWVRESFENILKQDAESL
GLNVLYDVAHNIIKKEQHKIGKINRNMYVHRKGATRAFGPGRKEIPQEYRSVGQPVLIPGTMGTSSYILAGTETAMDETF
GSTAHGAGRVLSRSGAKREFTPEEISKDLADKGIILKANSQPVIAEEAPNAYKDVDSVVKTADKTGISKLVAQMKPLGVI
KG

Sequences:

>Translated_482_residues
MVGKGDLEKVRDCVYEIPSSARKDMRVPARIYLDEESIKTLEDGAIEQVANVACLEGIQKRSIGLPDIHFGYGFSIGGVA
AFSEINGVVSPGGVGFDINCGVRLLKTNLTKQDIQPHLKDLVNELFNKVPSGLGSNGIKHLKESEIDDVLENGAKWAVEN
GFGWEEDLKFLEENGCMEGADASLVSTKAKRRGIPQLGSLGSGNHFLEIQSIGDIYDEEIAKAYGLEKDQVVVLIHTGSR
GCGYQICADNLREMDKTAKRLKLNLPDRQLACAPIDSDEGQNYLKAMAAGANYAWTNRQMIQHWVRESFENILKQDAESL
GLNVLYDVAHNIIKKEQHKIGKINRNMYVHRKGATRAFGPGRKEIPQEYRSVGQPVLIPGTMGTSSYILAGTETAMDETF
GSTAHGAGRVLSRSGAKREFTPEEISKDLADKGIILKANSQPVIAEEAPNAYKDVDSVVKTADKTGISKLVAQMKPLGVI
KG
>Mature_482_residues
MVGKGDLEKVRDCVYEIPSSARKDMRVPARIYLDEESIKTLEDGAIEQVANVACLEGIQKRSIGLPDIHFGYGFSIGGVA
AFSEINGVVSPGGVGFDINCGVRLLKTNLTKQDIQPHLKDLVNELFNKVPSGLGSNGIKHLKESEIDDVLENGAKWAVEN
GFGWEEDLKFLEENGCMEGADASLVSTKAKRRGIPQLGSLGSGNHFLEIQSIGDIYDEEIAKAYGLEKDQVVVLIHTGSR
GCGYQICADNLREMDKTAKRLKLNLPDRQLACAPIDSDEGQNYLKAMAAGANYAWTNRQMIQHWVRESFENILKQDAESL
GLNVLYDVAHNIIKKEQHKIGKINRNMYVHRKGATRAFGPGRKEIPQEYRSVGQPVLIPGTMGTSSYILAGTETAMDETF
GSTAHGAGRVLSRSGAKREFTPEEISKDLADKGIILKANSQPVIAEEAPNAYKDVDSVVKTADKTGISKLVAQMKPLGVI
KG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=494, Percent_Identity=46.5587044534413, Blast_Score=452, Evalue=1e-127,
Organism=Escherichia coli, GI2367224, Length=448, Percent_Identity=29.9107142857143, Blast_Score=169, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI17506665, Length=494, Percent_Identity=46.3562753036437, Blast_Score=447, Evalue=1e-126,
Organism=Drosophila melanogaster, GI24585217, Length=494, Percent_Identity=48.3805668016194, Blast_Score=444, Evalue=1e-125,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 52587; Mature: 52587

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGKGDLEKVRDCVYEIPSSARKDMRVPARIYLDEESIKTLEDGAIEQVANVACLEGIQK
CCCCCHHHHHHHHHHHCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
RSIGLPDIHFGYGFSIGGVAAFSEINGVVSPGGVGFDINCGVRLLKTNLTKQDIQPHLKD
HCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEEHHCCCHHHHHHHHHH
LVNELFNKVPSGLGSNGIKHLKESEIDDVLENGAKWAVENGFGWEEDLKFLEENGCMEGA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCC
DASLVSTKAKRRGIPQLGSLGSGNHFLEIQSIGDIYDEEIAKAYGLEKDQVVVLIHTGSR
CCHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCC
GCGYQICADNLREMDKTAKRLKLNLPDRQLACAPIDSDEGQNYLKAMAAGANYAWTNRQM
CCCHHHHHHHHHHHHHHHHHEECCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCHHH
IQHWVRESFENILKQDAESLGLNVLYDVAHNIIKKEQHKIGKINRNMYVHRKGATRAFGP
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
GRKEIPQEYRSVGQPVLIPGTMGTSSYILAGTETAMDETFGSTAHGAGRVLSRSGAKREF
CHHHHHHHHHHCCCCEEEECCCCCCCEEEECCHHHHHHHCCCCCCCHHHHHHCCCCCCCC
TPEEISKDLADKGIILKANSQPVIAEEAPNAYKDVDSVVKTADKTGISKLVAQMKPLGVI
CHHHHHHHHHCCCEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KG
CC
>Mature Secondary Structure
MVGKGDLEKVRDCVYEIPSSARKDMRVPARIYLDEESIKTLEDGAIEQVANVACLEGIQK
CCCCCHHHHHHHHHHHCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
RSIGLPDIHFGYGFSIGGVAAFSEINGVVSPGGVGFDINCGVRLLKTNLTKQDIQPHLKD
HCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEEHHCCCHHHHHHHHHH
LVNELFNKVPSGLGSNGIKHLKESEIDDVLENGAKWAVENGFGWEEDLKFLEENGCMEGA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCC
DASLVSTKAKRRGIPQLGSLGSGNHFLEIQSIGDIYDEEIAKAYGLEKDQVVVLIHTGSR
CCHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCC
GCGYQICADNLREMDKTAKRLKLNLPDRQLACAPIDSDEGQNYLKAMAAGANYAWTNRQM
CCCHHHHHHHHHHHHHHHHHEECCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCHHH
IQHWVRESFENILKQDAESLGLNVLYDVAHNIIKKEQHKIGKINRNMYVHRKGATRAFGP
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
GRKEIPQEYRSVGQPVLIPGTMGTSSYILAGTETAMDETFGSTAHGAGRVLSRSGAKREF
CHHHHHHHHHHCCCCEEEECCCCCCCEEEECCHHHHHHHCCCCCCCHHHHHHCCCCCCCC
TPEEISKDLADKGIILKANSQPVIAEEAPNAYKDVDSVVKTADKTGISKLVAQMKPLGVI
CHHHHHHHHHCCCEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]