| Definition | Methanosphaera stadtmanae DSM 3091 chromosome, complete genome. |
|---|---|
| Accession | NC_007681 |
| Length | 1,767,403 |
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The map label for this gene is ygcB [C]
Identifier: 84489234
GI number: 84489234
Start: 485917
End: 488304
Strand: Direct
Name: ygcB [C]
Synonym: Msp_0422
Alternate gene names: 84489234
Gene position: 485917-488304 (Clockwise)
Preceding gene: 84489233
Following gene: 84489235
Centisome position: 27.49
GC content: 23.07
Gene sequence:
>2388_bases ATGTTATCTTATACTGATAAAATTAATGAACTTTATTCACACCCTCAAAAGCCTTTAACAGAACATTTGTTAAATGTAGC AGAAAATTCAAGAAGTATCTTTGAAAATCTTAACATAGAAAATAATTCTTTCTATGCCTCCCTTTCTTTTTTAATTGGAT TATGTCATGATTTTGCTAAATGCACCAGTTTTTTTCAAAAACATCTATTTGGAATAGAAAATAGTGAAAAGGCATATCAT AGCTTTTTATCTGCAATTTTTGGGTATTATGTGATAAAAAAGTACATAAAAGAAAATGAAATTAAAGAAGAACTAAATTA TCCTATCATAGGTTACATTTGTATAATCAATCATCATGGAAATTTAAAAGATGTTTATAATACAGAAAAATCAGAATTTA ATAAAATAAATCAAATTCCACAATATCTTGATGAACAAATTAAGGATATTAAATCAAGAAACATATCTAGTCTTAAAGAA TTTTATTTAAAATACAACATTTCCATCGATGATTTTTTAGAAGAATATGAAGAAATTAAATCAGTTATTAAAAAAGATTT AAAAATAATATATCGAGAAAAAAGAATTGATAATTACTTCAATGTATTAATACTATTTTCAGTATTATTAGATAGTGATA AGTTAGATGCTTCTTACACTGAGACATATCCTAGACAAGAACTTAATGCTAATTTAGTTGACTTATATAAACAAGAAAAA TTTGGTCAATATGAAGGTATTAATGAAATTCGAGAAGAAGCTTATCAAGAATTAACAAGTTCTCTTGAAAATATTGATTT AAACAATAAAATCTATTCAATTACGTTACCTACTGGTTCTGGTAAAACAATGAGTGCATTTTCTTTTGCATTAAAATTAC GAAGAAAAATAAAAAACGAAAAAAATATTATACCTCGAATAATATATACCATGCCTTTTTTAAGTATTGTTGATCAAAAT GAAGAAGTATTAAGAAAAATATTAAATTATTCCAATTATGATACTTCTGATATTTTAATTAAACATAATTCCACATCTGA ATTATCTTATGTGGTAAATAAAAATGGAACTACGAAAATACAAGATGATCCTACTGAAAAAGCTGAATTAGATGTAGATA AAGCTGAAATGCTACTTGAAGGATGGTATTCAGAAATAGTTATAACTACGTTTTATCAATTAGCATATACTCTCATATCA AATAAAAATAAAGCATTAAGAAAATTTCATAATATAAGTAATTCTATCATAATAGTAGATGAAGCACAATCTATTCCAGC AAAATATAATCAAATATTCAAAACAGCATTAGATTATTTGTCTAAAAAATTTAATGTATGGATTATATTCATGACTGCTA CTCAACCAGAAATTTTCAAAGAAAGTGATGGAATATTACCTTTAATTACTAATGAACAGAAATACTTTGACTGTTTTGAT AGAGTTAACTATGTATTTCATCATACACCAATGACAATTGATGATTTTAAAGAAAAAATAGTTGATATAATTCAAGAAAA TAATAAAGATATTATGATAGTATTAAATACTATATCATCATCAACAGAGATATTTGAGTATATACAAGGGTATTTTGATG AAGAAGGTATAGAATTATACTATTTATCTGGAAATATAATTCCAAAAGAGAAACTAGAACGAATTAAAAAAATTAAAGAA TCTAATAATAGAAAAGTCATCGTTACAACACAATTAATTGAAGCAGGAGTAAATATTGATGTAGATATAATCTACAGAGA TTTTGCTGTGATGGATAGTATTATTCAAACTGCAGGTAGATGTAATAGGAATGATAAAAAAGAAAAAGGAACAGTAAATA TAATACATTTAATTAATGAAAATAAAAGAGAATATAGTAGTTTTATTTATGACTCAACACTTCTTAGGCTTACTGAAGAA TTAACAAAAGATTATACAGAAATTTCAGAAAAAGATTTCAATTTAAAAATATCAAAAAAATATTATACAGAAGTAAATAA TCGTATAAGTCATGATGCATCACATAATTTAGAAAAAATAATATCAACACTTAAAATATCAAATATAACACATGAATTTA AATTAATTGAAGATGATATTGAAAAAATAGATGTTTTTATTGAAATAAATGATGAAGCAACTGAAATATGGGATAAATAT AATGAAATATATTCAGATAAAAATTTAAAAAATTATGAAAAAAAATTAAAACTTAAAAAAATAAATAGACAATTTAACAA TTATGTTCTTTCTATACCCACAAATCTCATAGGAACAGTTAATTATGATAAATTCATATTTCATGTAGGAAAAAATGATA TTGAACGAAAATATAATCTAAATACGGGTTTTATAGCACAAGAAAACGAAAATGCATATATGATATAA
Upstream 100 bases:
>100_bases GATGATCGTAGTGTTACTTCATTTTTAGAGTATTATTATGAATCAATGGGCAATACTATTAAACTTGAATCCTGTGAATA TTATAAAGTTGGAGAAGACA
Downstream 100 bases:
>100_bases AGGATAAATATGATGAAAGATTCACAGATAACTGGAGTAATGATTCAGTATTATAAAATATGTAAAAGAGAACTATGGTT TTATATGAATCAAATAAATA
Product: helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 795; Mature: 795
Protein sequence:
>795_residues MLSYTDKINELYSHPQKPLTEHLLNVAENSRSIFENLNIENNSFYASLSFLIGLCHDFAKCTSFFQKHLFGIENSEKAYH SFLSAIFGYYVIKKYIKENEIKEELNYPIIGYICIINHHGNLKDVYNTEKSEFNKINQIPQYLDEQIKDIKSRNISSLKE FYLKYNISIDDFLEEYEEIKSVIKKDLKIIYREKRIDNYFNVLILFSVLLDSDKLDASYTETYPRQELNANLVDLYKQEK FGQYEGINEIREEAYQELTSSLENIDLNNKIYSITLPTGSGKTMSAFSFALKLRRKIKNEKNIIPRIIYTMPFLSIVDQN EEVLRKILNYSNYDTSDILIKHNSTSELSYVVNKNGTTKIQDDPTEKAELDVDKAEMLLEGWYSEIVITTFYQLAYTLIS NKNKALRKFHNISNSIIIVDEAQSIPAKYNQIFKTALDYLSKKFNVWIIFMTATQPEIFKESDGILPLITNEQKYFDCFD RVNYVFHHTPMTIDDFKEKIVDIIQENNKDIMIVLNTISSSTEIFEYIQGYFDEEGIELYYLSGNIIPKEKLERIKKIKE SNNRKVIVTTQLIEAGVNIDVDIIYRDFAVMDSIIQTAGRCNRNDKKEKGTVNIIHLINENKREYSSFIYDSTLLRLTEE LTKDYTEISEKDFNLKISKKYYTEVNNRISHDASHNLEKIISTLKISNITHEFKLIEDDIEKIDVFIEINDEATEIWDKY NEIYSDKNLKNYEKKLKLKKINRQFNNYVLSIPTNLIGTVNYDKFIFHVGKNDIERKYNLNTGFIAQENENAYMI
Sequences:
>Translated_795_residues MLSYTDKINELYSHPQKPLTEHLLNVAENSRSIFENLNIENNSFYASLSFLIGLCHDFAKCTSFFQKHLFGIENSEKAYH SFLSAIFGYYVIKKYIKENEIKEELNYPIIGYICIINHHGNLKDVYNTEKSEFNKINQIPQYLDEQIKDIKSRNISSLKE FYLKYNISIDDFLEEYEEIKSVIKKDLKIIYREKRIDNYFNVLILFSVLLDSDKLDASYTETYPRQELNANLVDLYKQEK FGQYEGINEIREEAYQELTSSLENIDLNNKIYSITLPTGSGKTMSAFSFALKLRRKIKNEKNIIPRIIYTMPFLSIVDQN EEVLRKILNYSNYDTSDILIKHNSTSELSYVVNKNGTTKIQDDPTEKAELDVDKAEMLLEGWYSEIVITTFYQLAYTLIS NKNKALRKFHNISNSIIIVDEAQSIPAKYNQIFKTALDYLSKKFNVWIIFMTATQPEIFKESDGILPLITNEQKYFDCFD RVNYVFHHTPMTIDDFKEKIVDIIQENNKDIMIVLNTISSSTEIFEYIQGYFDEEGIELYYLSGNIIPKEKLERIKKIKE SNNRKVIVTTQLIEAGVNIDVDIIYRDFAVMDSIIQTAGRCNRNDKKEKGTVNIIHLINENKREYSSFIYDSTLLRLTEE LTKDYTEISEKDFNLKISKKYYTEVNNRISHDASHNLEKIISTLKISNITHEFKLIEDDIEKIDVFIEINDEATEIWDKY NEIYSDKNLKNYEKKLKLKKINRQFNNYVLSIPTNLIGTVNYDKFIFHVGKNDIERKYNLNTGFIAQENENAYMI >Mature_795_residues MLSYTDKINELYSHPQKPLTEHLLNVAENSRSIFENLNIENNSFYASLSFLIGLCHDFAKCTSFFQKHLFGIENSEKAYH SFLSAIFGYYVIKKYIKENEIKEELNYPIIGYICIINHHGNLKDVYNTEKSEFNKINQIPQYLDEQIKDIKSRNISSLKE FYLKYNISIDDFLEEYEEIKSVIKKDLKIIYREKRIDNYFNVLILFSVLLDSDKLDASYTETYPRQELNANLVDLYKQEK FGQYEGINEIREEAYQELTSSLENIDLNNKIYSITLPTGSGKTMSAFSFALKLRRKIKNEKNIIPRIIYTMPFLSIVDQN EEVLRKILNYSNYDTSDILIKHNSTSELSYVVNKNGTTKIQDDPTEKAELDVDKAEMLLEGWYSEIVITTFYQLAYTLIS NKNKALRKFHNISNSIIIVDEAQSIPAKYNQIFKTALDYLSKKFNVWIIFMTATQPEIFKESDGILPLITNEQKYFDCFD RVNYVFHHTPMTIDDFKEKIVDIIQENNKDIMIVLNTISSSTEIFEYIQGYFDEEGIELYYLSGNIIPKEKLERIKKIKE SNNRKVIVTTQLIEAGVNIDVDIIYRDFAVMDSIIQTAGRCNRNDKKEKGTVNIIHLINENKREYSSFIYDSTLLRLTEE LTKDYTEISEKDFNLKISKKYYTEVNNRISHDASHNLEKIISTLKISNITHEFKLIEDDIEKIDVFIEINDEATEIWDKY NEIYSDKNLKNYEKKLKLKKINRQFNNYVLSIPTNLIGTVNYDKFIFHVGKNDIERKYNLNTGFIAQENENAYMI
Specific function: Unknown
COG id: COG1203
COG function: function code R; Predicted helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR006474 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]
EC number: NA
Molecular weight: Translated: 93437; Mature: 93437
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSYTDKINELYSHPQKPLTEHLLNVAENSRSIFENLNIENNSFYASLSFLIGLCHDFAK CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH CTSFFQKHLFGIENSEKAYHSFLSAIFGYYVIKKYIKENEIKEELNYPIIGYICIINHHG HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCC NLKDVYNTEKSEFNKINQIPQYLDEQIKDIKSRNISSLKEFYLKYNISIDDFLEEYEEIK CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH SVIKKDLKIIYREKRIDNYFNVLILFSVLLDSDKLDASYTETYPRQELNANLVDLYKQEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHCCHHHHHHHHHH FGQYEGINEIREEAYQELTSSLENIDLNNKIYSITLPTGSGKTMSAFSFALKLRRKIKNE CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC KNIIPRIIYTMPFLSIVDQNEEVLRKILNYSNYDTSDILIKHNSTSELSYVVNKNGTTKI CCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCC QDDPTEKAELDVDKAEMLLEGWYSEIVITTFYQLAYTLISNKNKALRKFHNISNSIIIVD CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEE EAQSIPAKYNQIFKTALDYLSKKFNVWIIFMTATQPEIFKESDGILPLITNEQKYFDCFD CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHCCCCEEEEEECCHHHHHHHH RVNYVFHHTPMTIDDFKEKIVDIIQENNKDIMIVLNTISSSTEIFEYIQGYFDEEGIELY HHHHHEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEE YLSGNIIPKEKLERIKKIKESNNRKVIVTTQLIEAGVNIDVDIIYRDFAVMDSIIQTAGR EECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCEEEEEHHHHHHHHHHHHHHHC CNRNDKKEKGTVNIIHLINENKREYSSFIYDSTLLRLTEELTKDYTEISEKDFNLKISKK CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECHH YYTEVNNRISHDASHNLEKIISTLKISNITHEFKLIEDDIEKIDVFIEINDEATEIWDKY HHHHHHHHHCCCHHCCHHHHHHHHHHHCCHHHHHHHHHHHCEEEEEEEECCHHHHHHHHH NEIYSDKNLKNYEKKLKLKKINRQFNNYVLSIPTNLIGTVNYDKFIFHVGKNDIERKYNL HHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEECCHHHCCCCCCCEEEECCCCHHHHEECC NTGFIAQENENAYMI CCCEEEECCCCCCCC >Mature Secondary Structure MLSYTDKINELYSHPQKPLTEHLLNVAENSRSIFENLNIENNSFYASLSFLIGLCHDFAK CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH CTSFFQKHLFGIENSEKAYHSFLSAIFGYYVIKKYIKENEIKEELNYPIIGYICIINHHG HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCC NLKDVYNTEKSEFNKINQIPQYLDEQIKDIKSRNISSLKEFYLKYNISIDDFLEEYEEIK CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH SVIKKDLKIIYREKRIDNYFNVLILFSVLLDSDKLDASYTETYPRQELNANLVDLYKQEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHCCHHHHHHHHHH FGQYEGINEIREEAYQELTSSLENIDLNNKIYSITLPTGSGKTMSAFSFALKLRRKIKNE CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC KNIIPRIIYTMPFLSIVDQNEEVLRKILNYSNYDTSDILIKHNSTSELSYVVNKNGTTKI CCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCC QDDPTEKAELDVDKAEMLLEGWYSEIVITTFYQLAYTLISNKNKALRKFHNISNSIIIVD CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEE EAQSIPAKYNQIFKTALDYLSKKFNVWIIFMTATQPEIFKESDGILPLITNEQKYFDCFD CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHCCCCEEEEEECCHHHHHHHH RVNYVFHHTPMTIDDFKEKIVDIIQENNKDIMIVLNTISSSTEIFEYIQGYFDEEGIELY HHHHHEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEE YLSGNIIPKEKLERIKKIKESNNRKVIVTTQLIEAGVNIDVDIIYRDFAVMDSIIQTAGR EECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCEEEEEHHHHHHHHHHHHHHHC CNRNDKKEKGTVNIIHLINENKREYSSFIYDSTLLRLTEELTKDYTEISEKDFNLKISKK CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECHH YYTEVNNRISHDASHNLEKIISTLKISNITHEFKLIEDDIEKIDVFIEINDEATEIWDKY HHHHHHHHHCCCHHCCHHHHHHHHHHHCCHHHHHHHHHHHCEEEEEEEECCHHHHHHHHH NEIYSDKNLKNYEKKLKLKKINRQFNNYVLSIPTNLIGTVNYDKFIFHVGKNDIERKYNL HHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEECCHHHCCCCCCCEEEECCCCHHHHEECC NTGFIAQENENAYMI CCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]